Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J23
         (991 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U94832-1|AAB53222.1|  711|Homo sapiens KSRP protein.                   31   8.6  
BC085004-1|AAH85004.1|  710|Homo sapiens KHSRP protein protein.        31   8.6  
AF093747-1|AAD29861.1|  115|Homo sapiens KH type splicing regula...    31   8.6  

>U94832-1|AAB53222.1|  711|Homo sapiens KSRP protein.
          Length = 711

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 647 PPPXPPPXXXXXXGXXGGGXXXPXPPP 727
           PPP PPP      G  G G   P  PP
Sbjct: 9   PPPGPPPPAGGGGGAGGAGGGPPPGPP 35


>BC085004-1|AAH85004.1|  710|Homo sapiens KHSRP protein protein.
          Length = 710

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 647 PPPXPPPXXXXXXGXXGGGXXXPXPPP 727
           PPP PPP      G  G G   P  PP
Sbjct: 9   PPPGPPPPAGGGGGAGGAGGGPPPGPP 35


>AF093747-1|AAD29861.1|  115|Homo sapiens KH type splicing
           regulatory protein protein.
          Length = 115

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 647 PPPXPPPXXXXXXGXXGGGXXXPXPPP 727
           PPP PPP      G  G G   P  PP
Sbjct: 9   PPPGPPPPAGGGGGAGGAGGGPPPGPP 35


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,572,307
Number of Sequences: 237096
Number of extensions: 910428
Number of successful extensions: 5284
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4459
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13269380858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)