Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_J21
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 242 5e-65
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 242 5e-65
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 242 5e-65
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 129 5e-31
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.67
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 3.6
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 6.3
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.3
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 8.3
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 8.3
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 8.3
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 242 bits (592), Expect = 5e-65
Identities = 118/127 (92%), Positives = 122/127 (96%)
Frame = +2
Query: 89 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 268
MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 269 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 448
LLIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
Query: 449 MPKDIQL 469
PKD+QL
Sbjct: 121 QPKDMQL 127
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 242 bits (592), Expect = 5e-65
Identities = 118/127 (92%), Positives = 122/127 (96%)
Frame = +2
Query: 89 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 268
MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 269 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 448
LLIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
Query: 449 MPKDIQL 469
PKD+QL
Sbjct: 121 QPKDMQL 127
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 242 bits (592), Expect = 5e-65
Identities = 118/127 (92%), Positives = 122/127 (96%)
Frame = +2
Query: 89 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 268
MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 269 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 448
LLIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
Query: 449 MPKDIQL 469
PKD+QL
Sbjct: 121 QPKDMQL 127
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 129 bits (312), Expect = 5e-31
Identities = 70/112 (62%), Positives = 88/112 (78%), Gaps = 10/112 (8%)
Frame = +2
Query: 164 ARKSAPATGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-- 325
A+KS A G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61
Query: 326 --KTD--LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 469
TD LR+QS+A+ LQEA+EA+LV LFEDTNLCAIHAKRVTIM +D+QL
Sbjct: 62 NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQL 113
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.5 bits (63), Expect = 0.67
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +2
Query: 194 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRFQSSAVMA 364
+ + HR + +L E + +++ S LLI P Q +RE+A DF +F+ +
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566
Query: 365 LQ---EASEAYLVGLFE 406
L+ E EAY+ L E
Sbjct: 567 LEAPDEEQEAYIRSLQE 583
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +1
Query: 88 NGSNEADRPKVDRGESSAQTTRDESCPKKRTGDRRREEAPQISTRHRSPQRDKAIPEKHR 267
+ +++ D ++ TT E + T EE+ + S DK++ KH
Sbjct: 305 SSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKIHDKSLKRKHE 364
Query: 268 AFDPQAAVSKISAR 309
D +++ S S+R
Sbjct: 365 --DDESSTSTKSSR 376
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1
Query: 109 RPKVDRGESSAQTTRDESCPKKRTGDRRREEAPQISTRHRSPQRDKAIPEKHRAFD--PQ 282
R +D S T RDE P KR ++ + + P+ D++ K + +
Sbjct: 1832 RHNIDSANLSRGTERDEDIPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQDVLNKIDE 1891
Query: 283 AAVSKISARNRPG 321
+ + + S++ +PG
Sbjct: 1892 SEIEQASSK-KPG 1903
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 200 SSRRRSPVRFFGQLSSRVVCAELSPLSTFGRSASFEPFPS 81
+S ++SP G+LSS+ + SP+S F +S S PS
Sbjct: 515 NSSQKSP----GKLSSKGLLNSFSPISPFSKSKSHNHHPS 550
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/61 (21%), Positives = 25/61 (40%)
Frame = +1
Query: 127 GESSAQTTRDESCPKKRTGDRRREEAPQISTRHRSPQRDKAIPEKHRAFDPQAAVSKISA 306
GE+ + S PK+ T + E P+ + + A+P + + P A + +
Sbjct: 411 GETDTTDVINNSTPKEETEESPSTELPETGKEQPPNKAEPAVPTEASSTKPSEAAEESTP 470
Query: 307 R 309
R
Sbjct: 471 R 471
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +1
Query: 187 RRREEAPQISTRHRSPQRDKAIPEKHRAFDPQAAVSKISA----RNRPGL*DRSALSKFG 354
R R S+RHRSP + + P + + ++ + + +RPG + L +
Sbjct: 105 RARSTHVASSSRHRSPSHNDSSPSTQSSLKSRGSIRRYKSVREGSHRPGRSSKEPLDQID 164
Query: 355 RDGFTG 372
R TG
Sbjct: 165 RLDVTG 170
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 230 ALREIRRYQKSTELLIRKLPFQR 298
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,729
Number of Sequences: 5004
Number of extensions: 55403
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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