Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J20
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 378 GXPXXPPPPXPXXPPP 425
           G    PP P P  PPP
Sbjct: 333 GDSDTPPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 572 PXXXXPPPPPP 604
           P    PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 350 RPXXPPPPPGXS 385
           +P  PPPPP  S
Sbjct: 340 KPAPPPPPPSSS 351


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 423 GGXXXGGGGGXXXXXPGGGGGXXGL 349
           GG   G  GG        GGG  GL
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGGL 52


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +3

Query: 537 PXXTXPPXPRXNPXGXXPPPPPP 605
           P    PP P   P    PP  PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 360 PPXPPPGXPXXPPPPXPXXPPP 425
           PP P  G P   PP  P    P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.150    0.553 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,967
Number of Sequences: 438
Number of extensions: 11433
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)