Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J18
         (948 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   235   5e-63
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   235   5e-63
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   2.9  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.9  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   3.9  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   8.9  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  235 bits (576), Expect = 5e-63
 Identities = 111/147 (75%), Positives = 126/147 (85%)
 Frame = +2

Query: 143 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 322
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 323 EKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 502
           EKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGI
Sbjct: 63  EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGI 122

Query: 503 YGLDFYVVLGRPGFNVAHRRRKTXKSG 583
           YG+DFYVV+ RPG  VA R+ +  + G
Sbjct: 123 YGMDFYVVMDRPGMRVARRKAQRGRVG 149



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +3

Query: 573 GKVGFPHRLTKEDAMKWFQQKYDGIIL 653
           G+VG+ H++  ED + WF+QKYD ++L
Sbjct: 146 GRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  235 bits (576), Expect = 5e-63
 Identities = 111/147 (75%), Positives = 126/147 (85%)
 Frame = +2

Query: 143 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 322
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 323 EKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 502
           EKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGI
Sbjct: 63  EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGI 122

Query: 503 YGLDFYVVLGRPGFNVAHRRRKTXKSG 583
           YG+DFYVV+ RPG  VA R+ +  + G
Sbjct: 123 YGMDFYVVMDRPGMRVARRKAQRGRVG 149



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +3

Query: 573 GKVGFPHRLTKEDAMKWFQQKYDGIIL 653
           G+VG+ H++  ED + WF+QKYD ++L
Sbjct: 146 GRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
 Frame = +3

Query: 393 SENMNCGVTTSPPRVILASVFKNTL----TWVSST--------IPQLEFMDWTFT-SYLA 533
           S+N N   T    +  L+S+FK++L    T VSST         P  E + WTF+   + 
Sbjct: 604 SQNKNPRKTAISRKPTLSSMFKSSLSQLMTTVSSTNVHYIRCIKPNEEKLPWTFSPPMVL 663

Query: 534 GQVST*HT-EGVRXGKVGFPHRLTKEDAMKWFQQKYDGIILNSKQ 665
            Q+      E +R   +GFP R + E+    F+     I+L+SK+
Sbjct: 664 SQLRACGVFETIRISSLGFPARFSYEEFAHRFR-----ILLSSKE 703


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 176 YEDSALHF*NYPSEPSSPFYLSST 105
           YE+ + +  +Y S+PSSP Y+SS+
Sbjct: 153 YEEDSYNNYDYTSDPSSPNYISSS 176


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 314 GYQKTALYT*PWKIQAVVL*VAPTPWRHESA 222
           G     +Y   W I A +L V P PWR+ S+
Sbjct: 121 GLYSHPIYPLLWVITAFILIVFPFPWRYRSS 151


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -3

Query: 655 LSMIPSYFC-WNHFIASSFVRRW 590
           LS I S+   W+H+I++SF+ +W
Sbjct: 509 LSTIHSFINNWSHYISASFLSKW 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,655
Number of Sequences: 5004
Number of extensions: 57349
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)