Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J18
         (948 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   252   3e-67
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   250   1e-66
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    30   2.1  
Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    29   4.9  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  252 bits (617), Expect = 3e-67
 Identities = 119/147 (80%), Positives = 131/147 (89%)
 Frame = +2

Query: 149 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 328
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74

Query: 329 IAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 508
           IAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG
Sbjct: 75  IAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYG 134

Query: 509 LDFYVVLGRPGFNVAHRRRKTXKSGIS 589
           +DFYVVL R G  +A RRR   + G S
Sbjct: 135 MDFYVVLDRAGRRIAKRRRAPGRVGPS 161



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = +3

Query: 573 GKVGFPHRLTKEDAMKWFQQKYDGIILNSK 662
           G+VG  HR+ +E+++KWFQQKYDGIIL  K
Sbjct: 156 GRVGPSHRVEREESIKWFQQKYDGIILPPK 185


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  250 bits (611), Expect = 1e-66
 Identities = 118/146 (80%), Positives = 129/146 (88%)
 Frame = +2

Query: 152 KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 331
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75

Query: 332 AVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGL 511
           AVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+
Sbjct: 76  AVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGM 135

Query: 512 DFYVVLGRPGFNVAHRRRKTXKSGIS 589
           DFYVVL R G  V+ RRR   + G S
Sbjct: 136 DFYVVLNRNGVRVSKRRRAPGRIGPS 161



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +3

Query: 573 GKVGFPHRLTKEDAMKWFQQKYDGIILNSK 662
           G++G  HR+ KE+ +KWFQQKYDGIIL  K
Sbjct: 156 GRIGPSHRVDKEETIKWFQQKYDGIILPPK 185


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 344 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 502
           ++R   AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 649 MIPSYFCWNHFIASSFVRRWGNPTFPCLTPSVCYVETWPAKYDVKVQSI 503
           +I S+F WN+   +  +R +GN    C+ P V Y+ T P      VQ I
Sbjct: 273 VICSFFFWNYTSLAIMLRPFGNDLDTCVAPWVFYL-THPVFRKKVVQRI 320


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 445  AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 308
            AK+ + G ++ PQ  FS+F+  +  FF  +    T+  N  I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 406 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 317
           ++  DF+  +KDFF C   SD T  S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,316,716
Number of Sequences: 27780
Number of extensions: 318435
Number of successful extensions: 869
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)