Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J17
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    27   3.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   6.1  

>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +3

Query: 585 TTTSSDY-----PNPSGIPLSTSSCAELSHSFYXPPP 680
           T ++SDY     PNP G+  ++SSC  + + F+   P
Sbjct: 230 TYSASDYLPAYPPNPEGMSSTSSSCKTIVYQFFFRVP 266


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 453  ISSFNFNKVMLSNNASMVRVGLSN-DN*HNFYK-HLQSTIYVYQSSTTTSSD 602
            +++F  NK  L +     +  +   +N +  YK H Q  +    SST+TSSD
Sbjct: 1267 LANFRLNKEQLESQLQTEKAAVKKLENSNEEYKRHNQEILLSLNSSTSTSSD 1318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,965
Number of Sequences: 5004
Number of extensions: 40609
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)