Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J16
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    35   0.018
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.22 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 23/71 (32%), Positives = 24/71 (33%)
 Frame = -2

Query: 892 GGGPPGGXXLXXXRGFXPPGXKGGXXXFXXXXXGGGGXXXXXXGXXPGGXXGGVXXFSGX 713
           GG PPG        GF   G   G         GG        G  PGG  GG+  F G 
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257

Query: 712 XXPXFXFGGXP 680
                 FGG P
Sbjct: 258 PG---GFGGGP 265



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 28/94 (29%), Positives = 28/94 (29%)
 Frame = -3

Query: 888 GDPXGGFXXXXXGGFXPPGXKGGXGFFXXXPXGGXAGXXXKXXXXXGGX*XGFXXFPGXX 709
           G   GGF     G   PP   GG G F      G  G         GG   GF   PG  
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGF---GGEGHHHGGHGGFGGGPGGFEGGPGGF 240

Query: 708 XPXFXLGGDPXXXXLXGXXPXGXGXXPXPXXGSG 607
                 GG        G  P G G  P    G G
Sbjct: 241 GG--GPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 27/107 (25%), Positives = 30/107 (28%)
 Frame = +2

Query: 569 PPXKTFXQKAXKXPXPXKGXGFXPXPXGXXPXNXXXXGSPPKXKXGXXXPGKXXNPXXXP 748
           PP       A   P P +G    P P    P +    G  P             NP   P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPP---PRSAPSTGRQPPPLSSSRAVS---NPPAPP 392

Query: 749 PXXXSXXXXXPAXPPXGXXXKXPXPPFXPGGXKPPXXX*XXPPXGSP 889
           P         PA PP G   +   PP       PP      PP   P
Sbjct: 393 PAIPGRSA--PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +3

Query: 783 PPPPXXXXQKXXXPPFXPGGXNPRXXXKXXPPGGPPP 893
           PPPP    +    PP   G  N        PP  PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSN-----SSLPPPPPPP 343



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/55 (27%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
 Frame = +3

Query: 735 PPXXPPGXXPFXXXXXPPPPXXXXQKXXXPPFXPG--GXNPRXXXKXXPPGGPPP 893
           PP  PP   P      P  P         PP   G     P       PP  P P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +3

Query: 717 PEKXXTPPXXPPGXXPFXXXXXPPPPXXXXQKXXXPPFXPG 839
           P     PP  PPG  P      PPPP    ++    P   G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = +2

Query: 683 SPPKXKXGXXXPGKXXNPXXXPPXXXSXXXXXPAXPPXGXXXKXPXPPFXP 835
           SPP        P     P   PP         P  PP G     P PP  P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -3

Query: 891 GGDPXGGFXXXXXGGFXPPGXKGGXGFFXXXPXGGXAG 778
           GG+  GGF     GGF      G  G F     GG  G
Sbjct: 155 GGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 29/112 (25%), Positives = 30/112 (26%), Gaps = 4/112 (3%)
 Frame = +2

Query: 569  PPXKTFXQKAXKXPXPXKGXGFXPXPXGXXPXNXXXXGSPPKXKXGXXXPGKXXNPXXXP 748
            PP       A   P P  G    P P    P      G+PP  K     P         P
Sbjct: 1121 PPVPKPSVAAPPVPVP-SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP 1179

Query: 749  PXXXSXXXXXPAXPP-XGXXXKXP---XPPFXPGGXKPPXXX*XXPPXGSPP 892
            P         P  PP        P    PP  P    PP      P  G PP
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV---PTPSAGLPP 1228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.149    0.503 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,100
Number of Sequences: 5004
Number of extensions: 24253
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)