Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J15
         (984 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   0.49 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.58 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   0.81 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   7.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   7.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.4  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect(2) = 0.49
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 884 PPXPPPPPP 910
           PP PPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 22.2 bits (45), Expect(2) = 0.49
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 887 PXPPPPPPXXP 919
           P P PPPP  P
Sbjct: 234 PLPAPPPPPPP 244


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 577 PPPPPPXXXKKKKKKXXGXGG 515
           PPPPPP   KK+K K     G
Sbjct: 25  PPPPPPGYVKKRKNKTPAQSG 45



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +3

Query: 885 PPXXPXPPPXPPXXXSSXXXXXFXXFXXPPPPP 983
           PP  P PPP PP          F     PPPPP
Sbjct: 5   PPGNPPPPPPPP---------GFEPPSQPPPPP 28



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 577 PPPPPPXXXKKKKK 536
           PPPPPP    KK+K
Sbjct: 24  PPPPPPPGYVKKRK 37


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 884 PPXPPPPPP 910
           PP PPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 24.2 bits (50), Expect(2) = 0.81
 Identities = 9/29 (31%), Positives = 10/29 (34%)
 Frame = +2

Query: 893 PPPPPPXXPXXXVXXXXXFXXXXSXSPPP 979
           PPPPPP  P         +       P P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 23.4 bits (48), Expect(2) = 0.81
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 884 PPXPPPPP 907
           PP PPPPP
Sbjct: 761 PPPPPPPP 768


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 884 PPXPPPPPP 910
           PP PPPPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 884 PPXPPPPPP 910
           PP PPPPPP
Sbjct: 945 PPPPPPPPP 953


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 577 PPPPPPXXXKKKKKKXXGXG 518
           PPPPPP   + + K   G G
Sbjct: 311 PPPPPPPSRRNRGKPPIGNG 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,658,566
Number of Sequences: 5004
Number of extensions: 18234
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)