Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J13
         (1200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   0.66 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.0  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect(2) = 0.66
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 616 PPXXXXGXGGXPPPPPP 566
           P       GG PPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPP 311



 Score = 22.6 bits (46), Expect(2) = 0.66
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 583 PPPPPPXXXFF 551
           PPPPPP   F+
Sbjct: 309 PPPPPPSNDFW 319


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 592 GGXPPPPPPXXXFFFFXXXGGXPXXPPP 509
           GG PPPPPP           G P  PPP
Sbjct: 759 GGPPPPPPPPG-----VAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 616 PPXXXXGXGGXPPPPPP 566
           PP    G G  PPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 616 PPXXXXGXGGXPPPPPP 566
           PP       G PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 589 GXPPPPPPXXXFFFFXXXGGXPXXPPP 509
           G PPPPPP      F      P  PPP
Sbjct: 7   GNPPPPPPPPG---FEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,100,455
Number of Sequences: 5004
Number of extensions: 10219
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)