Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_J13
(1200 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 34 0.19
07_03_1136 + 24218601-24218734,24218769-24219906 33 0.34
03_05_0630 + 26260159-26260272,26260520-26260894 31 1.4
04_03_0791 + 19685720-19685914,19686436-19686459,19686823-196872... 31 1.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 2.7
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 27 2.9
07_01_0080 + 587674-588510 27 3.1
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 3.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 4.2
07_03_1300 - 25609670-25609915,25610006-25610130,25610240-256104... 29 5.5
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 26 6.0
06_03_1191 + 28286685-28287008,28287149-28287211,28287377-282874... 29 7.3
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 29 7.3
01_06_0604 + 30536172-30537143 25 8.5
10_08_0216 - 15942379-15942852,15942956-15943033 29 9.6
07_03_0693 - 20736568-20736996 29 9.6
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 34.3 bits (75), Expect = 0.19
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 583 PPPPPPXXXFFFFXXXGGXPXXPPP 509
PPPPPP FF F P PPP
Sbjct: 56 PPPPPPPAPFFPFLPDSAPPQLPPP 80
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 33.5 bits (73), Expect = 0.34
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +2
Query: 473 GGGGGG-----FXFFXXGGGXXXGAPXTXKKKKXXXGGXGGXXPPXPXXXXXGG 619
GGGGGG F GGG G + GG GG PP P GG
Sbjct: 303 GGGGGGHGAPELGFSGGGGGGGGGEIAGTVDLRGGGGGAGGVFPPTPDLGGGGG 356
Score = 30.3 bits (65), Expect = 3.1
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 473 GGGGGGFXFFXXGGGXXXGAPXTXKKKKXXXGGXGG 580
GGGGGG GGG GA ++ GG GG
Sbjct: 266 GGGGGGTDRNKGGGGGGGGALENAREDGAEGGGGGG 301
Score = 29.1 bits (62), Expect = 7.3
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +2
Query: 473 GGGGGGFXFFXXGGGXXXGAPXTXKKKKXXXGGXGG 580
GGGGGG GGG G P GG GG
Sbjct: 175 GGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGG 210
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 473 GGGGGGFXFFXXGGGXXXGAPXTXKKKKXXXGGXGG 580
GGGGGG GGG G ++ GG GG
Sbjct: 265 GGGGGGGTDRNKGGGGGGGGALENAREDGAEGGGGG 300
Score = 28.7 bits (61), Expect = 9.6
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +2
Query: 476 GGGGGFXFFXXGGGXXXGAPXTXKKKKXXXGGXGGXXPPXPXXXXXGG 619
GGGGG GGG GAP ++ GG GG P GG
Sbjct: 125 GGGGGARPPAPGGGGGGGAP-----RRVLGGGGGGGALARPPGGGRGG 167
>03_05_0630 + 26260159-26260272,26260520-26260894
Length = 162
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 473 GGGGGGFXFFXXGGGXXXGAPXTXKKKKXXXGGXGG 580
GGGGGG+ GGG G +++ GG GG
Sbjct: 97 GGGGGGYGGGRGGGGYGGGGGGGYGRREGGYGGGGG 132
>04_03_0791 +
19685720-19685914,19686436-19686459,19686823-19687205,
19687282-19687379,19687622-19687800,19687912-19688136,
19688619-19688678,19688816-19688896,19688983-19689388,
19690035-19690285
Length = 633
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 86 GIFPNXSDLNXYXGGKXPF*XXFXIGLIKISSFFL 190
GIF N DL Y G K PF IGL+++ F L
Sbjct: 210 GIFVNFKDLYYYNGNKLPF-AAAQIGLLRVREFTL 243
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.5 bits (58), Expect(2) = 2.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 589 GXPPPPPPXXXFFFFXXXGGXPXXPPP 509
G PPPPPP G P PPP
Sbjct: 688 GPPPPPPPPLPPANRTNGPGVPSAPPP 714
Score = 25.4 bits (53), Expect(2) = 5.8
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -3
Query: 583 PPPPPPXXXFFFFXXXGGXPXXPPP 509
PPPPPP + P PPP
Sbjct: 569 PPPPPPLPQSNYASSQPPPPPPPPP 593
Score = 22.2 bits (45), Expect(2) = 5.8
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -3
Query: 616 PPXXXXGXGGXPPPPPP 566
PP PPPPPP
Sbjct: 553 PPSGNKPAFSPPPPPPP 569
Score = 21.4 bits (43), Expect(2) = 2.7
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -3
Query: 616 PPXXXXGXGGXPPPPPP 566
PP G PPPPP
Sbjct: 653 PPAPGIGNKFPAPPPPP 669
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 26.6 bits (56), Expect(2) = 2.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -3
Query: 583 PPPPPPXXXFFFFXXXGGXPXXPPP 509
PPPPPP G P PPP
Sbjct: 230 PPPPPPPPKPANIAGAPGLPLPPPP 254
Score = 22.2 bits (45), Expect(2) = 2.9
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -3
Query: 616 PPXXXXGXGGXPPPPPP 566
P G PPPPPP
Sbjct: 193 PGTEEAGPSTLPPPPPP 209
>07_01_0080 + 587674-588510
Length = 278
Score = 26.6 bits (56), Expect(2) = 3.1
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -3
Query: 616 PPXXXXGXGGXPPPPPP 566
PP G PPPPPP
Sbjct: 94 PPPPPPSSGSPPPPPPP 110
Score = 22.2 bits (45), Expect(2) = 3.1
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 583 PPPPPPXXXFF 551
PPPPPP F
Sbjct: 113 PPPPPPPPPLF 123
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.3 bits (65), Expect = 3.1
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -3
Query: 616 PPXXXXGXGGXPPPPPPXXXFFFFXXXGGXPXXPPP 509
P G G PPPPPP G P PPP
Sbjct: 338 PSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPP 373
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.9 bits (64), Expect = 4.2
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -3
Query: 613 PXXXXGXGGXPPPPPPXXXFFFFXXXGGXPXXPPP 509
P G GG PPPPP GG P PPP
Sbjct: 1139 PPLPEGIGGVPPPPP-------VGGLGGPPAPPPP 1166
Score = 29.1 bits (62), Expect = 7.3
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -3
Query: 613 PXXXXGXGGXPPPPPPXXXFFFFXXXGGXPXXPPP 509
P G P PPPP GG P PPP
Sbjct: 1053 PGEVGGAPSPPSPPPPQRENTSVGIQGGIPPLPPP 1087
Score = 29.1 bits (62), Expect = 7.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 616 PPXXXXGXGGXPPPPPP 566
PP G G PPPPPP
Sbjct: 1099 PPPPSIGAGAPPPPPPP 1115
>07_03_1300 -
25609670-25609915,25610006-25610130,25610240-25610441,
25610533-25610631,25610735-25610821,25611120-25611431
Length = 356
Score = 29.5 bits (63), Expect = 5.5
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 476 GGGGGFXFFXXGGG 517
GGGGGF FF GGG
Sbjct: 41 GGGGGFDFFGFGGG 54
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 26.2 bits (55), Expect(2) = 6.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -3
Query: 628 FXXXPPXXXXGXGGXPPPPPP 566
F PP G PPPPPP
Sbjct: 409 FVQPPPPPTHTHGPPPPPPPP 429
Score = 21.4 bits (43), Expect(2) = 6.0
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -3
Query: 583 PPPPPPXXXFF 551
PPPPPP ++
Sbjct: 427 PPPPPPPVGYW 437
>06_03_1191 +
28286685-28287008,28287149-28287211,28287377-28287461,
28287561-28287623,28287954-28288029,28288190-28288223,
28289553-28289659,28289738-28289807,28289852-28289950
Length = 306
Score = 29.1 bits (62), Expect = 7.3
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = -3
Query: 616 PPXXXXGXGGXPPPPPPXXXFFFFXXXGGXPXXPPP 509
PP PPPPPP + P PPP
Sbjct: 11 PPHSSYAAPPPPPPPPPGTSLYASYRHHAYPPHPPP 46
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 29.1 bits (62), Expect = 7.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3
Query: 583 PPPPPPXXXFFFFXXXGGXPXXPPP 509
PPPPPP ++ P PPP
Sbjct: 111 PPPPPPPHLLHYYGHPPPPPPPPPP 135
>01_06_0604 + 30536172-30537143
Length = 323
Score = 24.6 bits (51), Expect(2) = 8.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 583 PPPPPPXXXFFFFXXXGG 530
PPPPPP F + GG
Sbjct: 42 PPPPPPPLAFPSYSRLGG 59
Score = 22.6 bits (46), Expect(2) = 8.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 598 GXGGXPPPPPP 566
G PPPPPP
Sbjct: 38 GAAAPPPPPPP 48
>10_08_0216 - 15942379-15942852,15942956-15943033
Length = 183
Score = 28.7 bits (61), Expect = 9.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 473 GGGGGGFXFFXXGGGXXXGAPXTXKKKKXXXGGXGG 580
GGGGGG+ + GG G P GG G
Sbjct: 83 GGGGGGYGYGAGGGYGQAGGPYYGPYASGGGGGGAG 118
>07_03_0693 - 20736568-20736996
Length = 142
Score = 28.7 bits (61), Expect = 9.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 509 GGGXXXGAPXTXKKKKXXXGGXGGXXPPXP 598
GGG G P T KK+ GG GG P
Sbjct: 42 GGGARGGVPSTRKKEIIKDGGGGGEGSSSP 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,565,881
Number of Sequences: 37544
Number of extensions: 168861
Number of successful extensions: 3883
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3280
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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