Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J12
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    29   1.2  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    27   2.7  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 171 LLRTGSTKLESIRNWGVSTYKCTKQLLYEKLGKSSRTVDTE 293
           +L TG+        WG  TY   K +  ++ G S+  V  E
Sbjct: 171 ILPTGAPSFSEAMRWGAETYHTLKSIAKKRYGSSAGNVGDE 211


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 592 IVNNVSSIVLLVRVFKELLKKCNAASNTSPLRVNER 485
           IV NV ++  + ++  E+LKK +   N +PL +  R
Sbjct: 308 IVENVKAVEFIDKLTPEILKKIDEILNFTPLEIQYR 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,423
Number of Sequences: 5004
Number of extensions: 58668
Number of successful extensions: 172
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)