Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J12
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153...    31   1.2  
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170...    29   3.7  
03_06_0774 + 36171177-36173099                                         29   6.5  
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552...    28   8.6  
06_01_0617 - 4483517-4483978,4484093-4484490,4484814-4484898,448...    28   8.6  

>08_02_0433 -
           17114880-17114972,17115053-17115149,17115244-17115306,
           17115765-17115918,17115992-17116178,17116567-17116871,
           17117638-17117803,17118261-17118652,17119032-17119208,
           17119565-17119604,17119762-17119809,17122393-17122428,
           17122832-17123104
          Length = 676

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 157 AEPLCDTSGGTYAGGKGIDLEVGNLGSVPDVTESL 53
           + P   TSGGT   GKGI +++GN        ESL
Sbjct: 374 SRPKGRTSGGTTGAGKGIGMKLGNTKKTNQFLESL 408


>03_01_0216 -
           1700223-1700666,1700749-1700860,1701534-1701837,
           1702358-1702426,1702543-1702657,1702740-1702811,
           1702918-1703016,1703148-1703219,1703394-1703465,
           1704940-1705154,1705277-1705495,1705792-1707076,
           1707270-1707398
          Length = 1068

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
 Frame = -2

Query: 525 MQPAILHHCGSMNVE---YPHCREIGSAVPVISVRGQQMLHPAHVECQRREQATLPEMSS 355
           M P      GS  V     P  + + S +P  S  G   L P     QR  Q+  P M  
Sbjct: 150 MMPGSAQIGGSQQVNAGAVPRPQGVNSMMPAASQGGA--LQPTQFATQRGMQSQPPSMGF 207

Query: 354 NVELHCTCVAFHGPSQSGPPA 292
           N +   +   F  P+Q G PA
Sbjct: 208 NQQPPPSSTGFMRPTQPGAPA 228


>03_06_0774 + 36171177-36173099
          Length = 640

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 363 MSSNVELHCTCVAFHGPSQSGPPALYQQFLNFF-QVSHTTIVWYT 232
           ++SN  L C+ +AF+  + S P A      N F +++H   V YT
Sbjct: 75  VASNPVLACSLLAFYAAAASSPTAAIPPACNLFDEMAHKDAVSYT 119


>07_03_0696 -
           20754773-20754821,20754930-20755028,20755107-20755226,
           20755317-20755402,20756013-20756109,20756181-20756268,
           20756358-20756454,20756797-20756892,20757029-20757125,
           20757571-20757689,20758559-20758616,20758751-20758857
          Length = 370

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 178 ELDQPSWSPYVIGESPPTSVPNNCCMRNLEKVQELLIQS 294
           ELD+P+   Y+  +S P   P N  +R+L  +  +L ++
Sbjct: 11  ELDRPNLEDYLPSDSLPQEFPRNLHLRDLLDISPVLTEA 49


>06_01_0617 -
           4483517-4483978,4484093-4484490,4484814-4484898,
           4485002-4485838
          Length = 593

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 9/36 (25%), Positives = 26/36 (72%)
 Frame = -1

Query: 595 LIVNNVSSIVLLVRVFKELLKKCNAASNTSPLRVNE 488
           +IV +VS+++LL+ + + ++ +C+  +NT+   +++
Sbjct: 491 VIVGSVSTLMLLISIVRLVVSRCSETANTNAPSIDD 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,658,537
Number of Sequences: 37544
Number of extensions: 402992
Number of successful extensions: 1258
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)