Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J12
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.92 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   1.2  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    24   2.1  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    24   2.1  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    24   2.1  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    24   2.1  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    24   2.1  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    24   2.1  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    24   2.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          24   2.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          24   2.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          24   2.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          24   2.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          24   2.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          24   2.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          24   2.1  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    24   2.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    24   2.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   2.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.5  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 402 RALGEAFADLAQKSPELQNQFLYNADTQRSLTRNGEVLLAALH 530
           ++L EAFA L +  P L +  L    T +  TR  + L   LH
Sbjct: 267 QSLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQVLH 309


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 192 KLESIRNWGVSTYKCTKQLLYEKLGKSSRTVDTELE 299
           KL  + ++G   YKCT  L +E  G S +T++  ++
Sbjct: 248 KLHQVAHYGEKVYKCT--LCHETFG-SKKTMELHIK 280


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 127 PFPPRFIPPDM 137


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 127 PFPPRFIPPDM 137


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 127 PFPPRFIPPDM 137


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 127 PFPPRFIPPDM 137


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 127 PFPPRFIPPDM 137


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 127 PFPPRFIPPDM 137


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 127 PFPPRFIPPDM 137


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 376 PFPPRFIPPDM 386


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 376 PFPPRFIPPDM 386


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 376 PFPPRFIPPDM 386


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 376 PFPPRFIPPDM 386


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 376 PFPPRFIPPDM 386


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 376 PFPPRFIPPDM 386


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 375 PFPPRFIPPDM 385


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 360 PFPPRFIPPDM 370


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 PFPPAYVPPEV 140
           PFPP ++PP++
Sbjct: 376 PFPPRFIPPDM 386


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 313 ISIWASSSVSTVLELFPSFSYNNC 242
           + IW    +ST+L L P F   +C
Sbjct: 26  LKIWTEEFLSTILRLDPKFIALHC 49


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -2

Query: 606 IHTVLLSIMYPQ*FYW*ECSRNY*RNVMQPAILHHCGSM 490
           +H     I  P    +     NY   +M  AILHH G +
Sbjct: 95  LHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKV 133


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 468 REIGSAVPVISVRGQQMLHPAH 403
           RE G+ VP+   +  QM+H  H
Sbjct: 309 RETGATVPLHMQKYVQMIHDLH 330


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 447 ELQNQFLYNADTQRSLTRNGEVLLAALHFFNNSLNTLTNKTIEDT-LLTIRQYESARVEY 623
           ELQN         R L  NG  + +  +   N LN L    +ED  +  ++ +E  R+ +
Sbjct: 808 ELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSH 867


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 468 REIGSAVPVISVRGQQMLHPAH 403
           RE G+ VP+   +  QM+H  H
Sbjct: 309 RETGATVPLHMQKYVQMIHDLH 330


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 252 TTIVWYTCRWRLPNYVWTPA 193
           TT VW    W+   + W PA
Sbjct: 68  TTNVWLEHEWQDHKFQWDPA 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,732
Number of Sequences: 438
Number of extensions: 4117
Number of successful extensions: 30
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)