Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J09
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...   111   1e-25
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    98   1e-21
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    41   3e-04
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    30   0.39 
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    29   0.90 
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch...    27   3.6  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   8.4  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    26   8.4  

>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score =  111 bits (267), Expect = 1e-25
 Identities = 48/75 (64%), Positives = 61/75 (81%)
 Frame = +3

Query: 372 GPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYKNAMYHNKHLFQGKTVLDIG 551
           G  K      +T++DYYFDSY+H+GIHEEMLKD+VRTL+Y++A+  N HLF+ K VLD+G
Sbjct: 3   GNTKKSADSGLTAKDYYFDSYSHWGIHEEMLKDDVRTLSYRDAIMQNPHLFRDKIVLDVG 62

Query: 552 CGTGILSMFAAKAGA 596
           CGTGILSMF A+AGA
Sbjct: 63  CGTGILSMFCARAGA 77


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 45/73 (61%), Positives = 55/73 (75%)
 Frame = +3

Query: 384 NVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYKNAMYHNKHLFQGKTVLDIGCGTG 563
           +VT ++  +  YYF+SYA   IH  ML D VRT  Y++ +YHNKH+F GKTVLD+GCGTG
Sbjct: 208 SVTPKKADNDSYYFESYAGNDIHFLMLNDSVRTEGYRDFVYHNKHIFAGKTVLDVGCGTG 267

Query: 564 ILSMFAAKAGATK 602
           ILSMF AKAGA K
Sbjct: 268 ILSMFCAKAGAKK 280


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +3

Query: 483 LTYKNAMYHNKHLFQGKTVLDIGCGTGILSMFAAKAGAT 599
           L +   ++  ++ F GK +LDIGCG GILS   A+ GA+
Sbjct: 63  LDFMTEVFRERNCFSGKKILDIGCGGGILSESMARLGAS 101


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 498 AMYHNKHLFQ-GKTVLDIGCGTGILSMFAAKAGA 596
           A Y  +H  Q G  VL++G GTG++S+  AK G+
Sbjct: 160 AEYIYQHPVQSGMRVLELGAGTGLVSILCAKMGS 193


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 22/88 (25%), Positives = 37/88 (42%)
 Frame = +3

Query: 303 IKMETMDVAQEGTSTVSTPVVENGPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRT 482
           +K E  D+ + G S+ S PVV     +N+  EE+    Y        G  + +  DE  T
Sbjct: 302 LKSELRDLEKSGGSSNSKPVVVRPKKRNILTEEL--EKYKKSKKVVLGKRKNLENDEEST 359

Query: 483 LTYKNAMYHNKHLFQGKTVLDIGCGTGI 566
           L   ++        + + V+D   G+ I
Sbjct: 360 LRALSSFQSKIRNAEDEDVMDSQYGSKI 387


>SPBC1347.09 |||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 369 NGPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLK-DEVRTLTYKNAMYHNKHLF---QGKT 536
           + P     ++ ++S+   F+  +   +  ++ K D+ R L   +    N + F    G +
Sbjct: 21  DNPSTLAISKVISSKILQFEDNSETSLRHDLPKYDQDRLLLTSDDDLTNVNNFWKKSGMS 80

Query: 537 VLDIGCGTGILS 572
           +LD  CGTG++S
Sbjct: 81  ILDFACGTGLIS 92


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = -1

Query: 738 YESLV-NWNSTSSTFPL----IISMTSSSLFASII 649
           +ES V  WN TSSTF L     +S  S   FASI+
Sbjct: 196 FESTVFPWNKTSSTFELDPTISVSGMSDECFASIV 230


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 634 NNXWSTLSLRPLVAPALAANIDRIP-VPQPISRT 536
           ++ W T +L P++  AL   + RI  V QP+ +T
Sbjct: 742 SSKWPTHTLSPIITTALKQPVRRISLVSQPLQKT 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,016
Number of Sequences: 5004
Number of extensions: 55049
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)