Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J06
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   4.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +1

Query: 169 NLEVVSRCC----IHTDRRVRYWSDRKIVLQ 249
           NL ++   C    I  DRR R+ SDR + L+
Sbjct: 322 NLNILVDMCEQDIIQNDRRTRHLSDRVVALE 352


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 262 QPSLSLVYVPG*EVPSDRHSASTPGGSTPGNSDRTT 369
           +P  ++VY PG    + +     P G+T G ++  T
Sbjct: 391 RPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVT 426


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 262 QPSLSLVYVPG*EVPSDRHSASTPGGSTPGNSDRTT 369
           +P  ++VY PG    + +     P G+T G ++  T
Sbjct: 411 RPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVT 446


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 262 QPSLSLVYVPG*EVPSDRHSASTPGGSTPGNSDRTT 369
           +P  ++VY PG    + +     P G+T G ++  T
Sbjct: 360 RPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVT 395


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 199 HTDRRVRYWSDRKIVLQN 252
           H D R+RYW    +V+ +
Sbjct: 275 HNDGRLRYWRTPSVVVSD 292


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 678 PVSPSGPSTASALVTTITTSAAS 610
           P  P  P+T    +TT TT+  +
Sbjct: 648 PHEPGAPATTITTITTTTTTTTT 670


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,828
Number of Sequences: 438
Number of extensions: 5695
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)