Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J04
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    31   0.16 
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    26   6.0  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    26   6.0  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    26   6.0  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    26   7.9  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 52   TNVDSDSLSKVLRGLGFSVTVLHNLRAEDINRYIQQISEMDH--TDNDCLLVAVLSHGEL 225
            T   ++ L K  + L  ++  LH+++  +INR + ++ +  +  TD D +L+   S G+ 
Sbjct: 1100 TGKANEDLGKYAKALDVAIMQLHSMKMNEINRIVDELWKQTYCGTDIDTILIRSDSEGKG 1159

Query: 226  GMLY 237
               Y
Sbjct: 1160 NRTY 1163


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 289 DKCPTLAGKPKLFFIQACQGDKLDGGIT 372
           D C  LAGK  L  IQ  Q D +  G T
Sbjct: 193 DACNQLAGKLNLLIIQKGQSDIISDGAT 220


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  FTGTNVDSDSLSKVLRGLGFSVTVLHNLRAED 138
           FTGT   +D +++ LR  G+    +H  +A+D
Sbjct: 375 FTGTKRVADDITRFLRQDGWPALAIHGDKAQD 406


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 245 TLIINQIICGITSLLINVQL*LENQSCSLF 334
           +L+ N I+CG TSL+    L L+N+   L+
Sbjct: 345 SLLNNVIVCGGTSLMQGFSLRLQNELSKLY 374


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 707 IKLFFSKQEKACQHTIYAKVPVFVDASV*Y 618
           +K F+   +K CQ     ++P+F+DA   Y
Sbjct: 243 LKKFWEYADKLCQFAKEKQIPLFIDAEQTY 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,410,927
Number of Sequences: 5004
Number of extensions: 72846
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)