Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J04
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0147 - 14095039-14095937,14096914-14097379                       31   1.2  
04_01_0285 - 3794628-3794801,3794935-3795090,3795232-3795729           29   4.8  

>11_04_0147 - 14095039-14095937,14096914-14097379
          Length = 454

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 34  P*DFTGTNVDSDSLSKVLRGLGFSVTVLH-NLRAED 138
           P  + G  +    L+ VLR  GFS+TVLH  LRA D
Sbjct: 12  PMPYPGHTIPMFHLAAVLRSRGFSITVLHTELRAPD 47


>04_01_0285 - 3794628-3794801,3794935-3795090,3795232-3795729
          Length = 275

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 534 VSQFFTKRLHKPRATSCVSPRVITWYR*EHNQKVSMNWDSVG 409
           VS   T    +P++ SC +PR + W       +    W SVG
Sbjct: 210 VSWTMTGSKARPKSDSCAAPREVEWGTGNEGDQRGSKWRSVG 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,115,311
Number of Sequences: 37544
Number of extensions: 402171
Number of successful extensions: 780
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)