Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J04
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.3  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 558 YTLDICLSESCFRILSQIHQISH 626
           YT DIC     +  + ++HQ++H
Sbjct: 232 YTCDICGKSFGYNHVLKLHQVAH 254


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 605  SNTPDITPMHQQKQVP 652
            S + DI+PM +QK +P
Sbjct: 1824 STSSDISPMSEQKSLP 1839



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 674 TPSLVWKKIT 703
           TP++VWKK T
Sbjct: 738 TPTIVWKKAT 747


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 605  SNTPDITPMHQQKQVP 652
            S + DI+PM +QK +P
Sbjct: 1820 STSSDISPMSEQKSLP 1835



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 674 TPSLVWKKIT 703
           TP++VWKK T
Sbjct: 734 TPTIVWKKAT 743


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 564 LDICLSESCFRILSQIHQ 617
           L +CLS +C  + S IHQ
Sbjct: 7   LIVCLSIACQDVTSAIHQ 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,384
Number of Sequences: 438
Number of extensions: 4980
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)