Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_J03
(920 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.075
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 31 0.30
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 29 0.70
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 29 0.93
SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S... 29 1.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.8
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 2.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.8
SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||... 27 3.7
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 27 3.7
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 27 4.9
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 27 4.9
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 26 6.5
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 26 6.5
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 8.6
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 8.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 8.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.075
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Frame = -3
Query: 447 PSVRSKASATAGADSSSPAPHSSGCARPHRFCSPAPSHAPSGTPNMPDTMVIAPNVSETL 268
P V +S A PAP S + P +P P APSG P +P V AP V +
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP-PVPAPSGIPPVPKPSVAAPPVPKPS 1108
Query: 267 SKENSLP---GCKPRPK*ITCGP 208
+P G P PK P
Sbjct: 1109 VAVPPVPAPSGAPPVPKPSVAAP 1131
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 405 SSSPAPHSSGCAR-PHRFCSPAPSHAPSGTPNMPDTMVIAPNV 280
++ P P SG P + P APSG P +P V AP V
Sbjct: 1129 AAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171
Score = 26.6 bits (56), Expect = 4.9
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -3
Query: 447 PSVRSKASATAGADSSSPAPHSSGCARPHRFCSPAPSHAPSGTPNMPDTMVIAPNVSETL 268
P+ S+A + + SS P+PHS+ A P S S AP+ T + + T
Sbjct: 1240 PAPSSEAPSVSTPRSSVPSPHSN--ASPSPTSSSMASAAPARTSVSRSKSKAERHETSTS 1297
Query: 267 SKENSLPG 244
S+++S G
Sbjct: 1298 SRKSSKSG 1305
Score = 25.8 bits (54), Expect = 8.6
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -3
Query: 396 PAPHSSGCARPHRFCSPA--PSHAPSGTPNMPDTMVIAPNV 280
P P S A P S A P APSG P +P V AP V
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 30.7 bits (66), Expect = 0.30
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = -3
Query: 447 PSVRSKASATAG----ADSSSPAPHSSGCARPHRFCSPAPSHAPSGTPNMPDTMVIAPNV 280
P V++K +AT A S PAP ++ + + + P+ A PN +
Sbjct: 988 PVVQNKPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTST 1047
Query: 279 SETLSKENSLPGCKPRPK*IT---CGPHHVSAP 190
+ T+ + ++ KP P +T P ++S P
Sbjct: 1048 TTTIKQATTVSASKPAPSTVTSAASSPSNISKP 1080
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 107 YKDDLRALIKNPSFMLSTIAFTCVAFVTGALTWWGPQV 220
Y L A + + + + F CV++ G +TWWG V
Sbjct: 788 YNYVLAAAMDSGVAVAGVVIFLCVSYPGGKITWWGNTV 825
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 29.1 bits (62), Expect = 0.93
Identities = 22/85 (25%), Positives = 32/85 (37%)
Frame = +2
Query: 272 VSLTFGAITMVSGMLGVPLGAWLGAGLQKRWGRAHPLLCGXXXXXXXXXXXXXXXXTEGY 451
+SLT +TM +LG G + A L + GR P+L G +
Sbjct: 168 ISLTVSLLTMTVFLLGYCSGPIIWAPLSELSGRKPPILIGMLGFGIFNISVAVGKDIQTI 227
Query: 452 MYAPFALIFIGELAININWAIVADM 526
M F F + + A +ADM
Sbjct: 228 MMCRFFAGFFASAPLTVVAAALADM 252
>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 118
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 631 NSD*VRTSSIPKHVRY*YLESFCCRTPWW 545
N D + + KHVR +S CR+PWW
Sbjct: 37 NFDYAFSMHLRKHVRLPNYKSVQCRSPWW 65
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.8
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = -3
Query: 417 AGADSSSPAPHSSGCARPHRFCS-PAPSHAPSGTPNMPDTMVIAPNVSETLSKENSLPGC 241
A A SS+PAP + P + P PS PS P ++ A S TL S
Sbjct: 1469 APAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAH 1528
Query: 240 KPRPK*ITCGPHHVSA 193
P P P H SA
Sbjct: 1529 VPSP--APPAPQHPSA 1542
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 471 RAKGAYM*PSVRSKASATAGADSSSPAPHSSGCARPHRFCSPAPSHAPSGTPNMPDT 301
+ + AY + +A + +SP+P S RP P P PS +PDT
Sbjct: 541 KRRKAYTSQQLNPAPTAMPHPNITSPSPSISVTQRPAVNVGPPPYVRPSAPSKLPDT 597
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 2.8
Identities = 23/96 (23%), Positives = 39/96 (40%)
Frame = -3
Query: 540 TTYSDMSATIAQLILIASSPINMRAKGAYM*PSVRSKASATAGADSSSPAPHSSGCARPH 361
TT S S + +SSP + S S +S+++ + SSS + SS +
Sbjct: 125 TTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 184
Query: 360 RFCSPAPSHAPSGTPNMPDTMVIAPNVSETLSKENS 253
S + S + S + + + P S T S +S
Sbjct: 185 SSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSS 220
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.8
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -3
Query: 444 SVRSKASATAGADSSSPAPHSSGCARPHRFCSPAPSHAPSGTPNMPDTMVIAPNVSETLS 265
S S +SA+ SSSP P +S C+ + S P+G + T I P V T +
Sbjct: 91 STSSTSSASTTGSSSSPLPSTS------TSCTTSTSIPPTGGSSSLST-PITPTVPPTST 143
Query: 264 KENSLP 247
S+P
Sbjct: 144 SSTSIP 149
>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 118
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 278 LTFGAITMVSGMLGVPLGAWLGAGLQKRWGRAHPL 382
+T + ++G+L V LGA+ GLQKR H L
Sbjct: 1 MTIWNVAALTGLLSVGLGAYGSHGLQKRVQDPHLL 35
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 552 LGGMTTYSDMSATIAQLILIASSPINMR 469
LGGMTT+ S ++ + +I+ P N R
Sbjct: 451 LGGMTTFLFSSVAVSGIAIISQIPFNRR 478
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 629 VISESLKSYLMPSPDDLPSKT 691
+ISE LKSY +PD+L S T
Sbjct: 506 LISEKLKSYFAENPDELLSLT 526
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 206 WGPQVIYLGLGLQPGNEFSF--ERVSLTFGAITMVSGMLGVPLGAW 337
WGP VIY+GL + + F++ + + I+MV +GV + A+
Sbjct: 145 WGPIVIYVGLFILLLSAFNYCSKLIIKALPLISMVIAWVGVVIAAF 190
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 6.5
Identities = 22/85 (25%), Positives = 30/85 (35%)
Frame = +2
Query: 272 VSLTFGAITMVSGMLGVPLGAWLGAGLQKRWGRAHPLLCGXXXXXXXXXXXXXXXXTEGY 451
+SLT +TM + G G + A L + GR PLL G +
Sbjct: 167 ISLTVSLLTMTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQTI 226
Query: 452 MYAPFALIFIGELAININWAIVADM 526
M F F + + A ADM
Sbjct: 227 MMCRFFSGFFASAPLTVVAAAFADM 251
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = -3
Query: 447 PSVRSKASATAGADSSSPAPHSSGCARPHRFCSPAPSHAPSGTPNMPDTMVIAPNVSETL 268
P+ +ASA A S + G A+P + +P+ + + D+M A +++ L
Sbjct: 228 PNQIQQASAATTASSKMTVDTNLGTAQPSLYNTPSSDYELANQEKPADSMASAASLNTPL 287
Query: 267 SKEN 256
S +
Sbjct: 288 SSND 291
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = -3
Query: 444 SVRSKASATAGADSSSPAPHSSGCARPHRFCSPAPSHAPSGTPNMPDTMVIA 289
+V SKA+A S+ P F +P P G P MP M+ A
Sbjct: 392 AVFSKATAEPAFKSAMAIPDMPSMPHVQGFPAPFPPFMMPGLPQMPPMMMNA 443
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 296 TMVSGMLGVPLGAWLGAGL 352
T ++G G+P G WLGA +
Sbjct: 563 TTITGRNGLPQGMWLGAAI 581
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = -3
Query: 447 PSVRSKASATAGADSSSPAPHSSGCARPHRFCSPAPSHAPSG---TPNMPDTMVIAPNVS 277
P++ +A+ + P P S + P AP P G P +P + IAP +
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Query: 276 ETLSKENSLPGCKPRP 229
+ LP P P
Sbjct: 461 AGMPAAPPLPPAAPAP 476
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,351
Number of Sequences: 5004
Number of extensions: 51624
Number of successful extensions: 195
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -