Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J03
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   5.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   5.2  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   9.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   9.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 439 DRGLHVRPFRPHIYRRARDQYQLGN 513
           +RG+   P  P+ YR A+  Y++GN
Sbjct: 772 ERGILFMPI-PNRYREAKQIYKVGN 795


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 65  ERGASEESHIKPTSYKDDLRALIKNPSFMLSTIAFTCVAFVT 190
           +RG     HI   SY D +  ++   SF L  I +  V +VT
Sbjct: 453 KRGEKIARHINSVSYIDKVARIVFPASFGLLNICY-WVIYVT 493


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = -3

Query: 402 SSPAPH--SSGCARPHRFCSPAPSHAPSGTPNMPDTMVIAPNVSETLSKENSLPGCKPRP 229
           S+P PH  + G    H   +P   H+ + TP+   +  +A +      +    P   P P
Sbjct: 410 STPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHP 469


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 229 QVNNLRSPPRERAGHERYACK 167
           QV NLR   R   G   YAC+
Sbjct: 49  QVANLRRHLRVHTGERPYACE 69


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 354 CSPAPSHAPSGTP 316
           C+P+P   P G P
Sbjct: 394 CTPSPPRGPGGVP 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,773
Number of Sequences: 438
Number of extensions: 3579
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)