Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_I24
(1412 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF286472-1|AAG00551.1| 567|Homo sapiens retinitis pigmentosa GT... 45 8e-04
BC032638-1|AAH32638.1| 411|Homo sapiens methyl-CpG binding doma... 35 0.82
AF120993-1|AAD56597.1| 411|Homo sapiens methyl-CpG binding prot... 35 0.82
AF120989-1|AAD56596.1| 302|Homo sapiens testis-specific methyl-... 35 0.82
AF072242-1|AAC68871.1| 411|Homo sapiens methyl-CpG binding prot... 35 0.82
X56597-1|CAA39935.1| 321|Homo sapiens fibrillarin protein. 32 4.4
M59849-1|AAA52453.1| 321|Homo sapiens fibrillarin protein. 32 4.4
CR457069-1|CAG33350.1| 321|Homo sapiens FBL protein. 32 4.4
BT020144-1|AAV38946.1| 321|Homo sapiens fibrillarin protein. 32 4.4
BT006830-1|AAP35476.1| 321|Homo sapiens fibrillarin protein. 32 4.4
BC019260-1|AAH19260.1| 321|Homo sapiens fibrillarin protein. 32 4.4
AC006950-1|AAD15623.1| 227|Homo sapiens FBRL_HUMAN [AA 1- 227] ... 32 4.4
AC005393-3|AAC28913.1| 318|Homo sapiens FBRL_HUMAN protein. 32 4.4
>AF286472-1|AAG00551.1| 567|Homo sapiens retinitis pigmentosa
GTPase regulator protein.
Length = 567
Score = 44.8 bits (101), Expect = 8e-04
Identities = 45/176 (25%), Positives = 60/176 (34%), Gaps = 8/176 (4%)
Frame = +3
Query: 318 GKGHEXXEXKXXXGEXKRGXXXXGXXG---GEKKRRXXFXXXXKRRGGKKKXGXXX---E 479
G+G E E GE + G G GE++ G+++ G E
Sbjct: 280 GEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEE 339
Query: 480 GGEGGGXXEXXXXEKRXXXG-GXGXGQXGRXRXEGXGXEEXGEDGRXGXNXXGSGERREK 656
G EG G E E G G G + G E E GE+ G G GE E+
Sbjct: 340 GEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEE 399
Query: 657 XXXGXXERXXEXXEGEQKGXARXGKXGXXGRXXKXKXXGE-XGXXHXGEXXXQXXE 821
G E EGE++G G + + GE G GE + E
Sbjct: 400 EGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGE 455
Score = 39.9 bits (89), Expect = 0.022
Identities = 50/194 (25%), Positives = 64/194 (32%), Gaps = 1/194 (0%)
Frame = +3
Query: 318 GKGHEXXEXKXXXGEXKRGXXXXGXXGGEKKRRXXFXXXXKRRGGKKKXGXXXEGGEGGG 497
GKG E + GE + G GE++ G ++ G E GEG G
Sbjct: 237 GKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEG---EEGEGEG 293
Query: 498 XXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXGXNXXGSGERREKXXXGXXE 677
E E G G + G EG G EE GE G G G+ E+ G E
Sbjct: 294 EEEEGEGEGEEEGEGEGEEEEG----EGEGEEE-GEG--EGEEEEGEGKGEEEGEEGEGE 346
Query: 678 RXXEXXEGEQKGXARXGK-XGXXGRXXKXKXXGEXGXXHXGEXXXQXXERXRXXGXAXXD 854
E EGE +G G+ G + GE GE + E +
Sbjct: 347 --GEEEEGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGE 404
Query: 855 GVAXXGXXXGXXXG 896
G G G G
Sbjct: 405 GEEEEGEEEGEEEG 418
Score = 39.5 bits (88), Expect = 0.029
Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 4/136 (2%)
Frame = +3
Query: 318 GKGHEXX-EXKXXXGEXKRGXXXXGXXGGEKK--RRXXFXXXXKRRGGKKKXGXXXEGGE 488
G+G E E + GE K+ GE++ + + RG +K+ G EGGE
Sbjct: 174 GEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGE 233
Query: 489 GGGXXEXXXXEKRXXXGGXGXGQXGRXRXE-GXGXEEXGEDGRXGXNXXGSGERREKXXX 665
E + G G + G E G G EE GE G GE +
Sbjct: 234 ---VEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGE 290
Query: 666 GXXERXXEXXEGEQKG 713
G E EGE++G
Sbjct: 291 GEGEEEEGEGEGEEEG 306
Score = 37.9 bits (84), Expect = 0.088
Identities = 50/219 (22%), Positives = 68/219 (31%), Gaps = 2/219 (0%)
Frame = +3
Query: 132 KXSXXXEKGXGKXXGXXKXXXXGXXEKGGGXXXXEXXXKXXXXXXXXXXXXXGRKKXXXX 311
K E+G G+ G + G E+G G E + G +
Sbjct: 272 KGEEEGEEGEGEEEGE-EGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEE 330
Query: 312 -WXGKGHEXXEXKXXXGEXKRGXXXXGXXGGEKKRRXXFXXXXKRRGGKKKXGXXXEGGE 488
GKG E E GE + G GE + + G G E GE
Sbjct: 331 EGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEEG----EGEGEEEGE 386
Query: 489 GGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXGXNXXGSGERREKXXXG 668
G G E+ G G G+ EG E E+G GE +
Sbjct: 387 GEGEEGEGEGEEEE---GEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGE 443
Query: 669 XXERXXEXXEGEQKGXARXGK-XGXXGRXXKXKXXGEXG 782
E E EGE++G R + G R + + E G
Sbjct: 444 EGEGEGEEEEGEEEGEEREKEGEGEENRRNREEEEEEEG 482
Score = 33.9 bits (74), Expect = 1.4
Identities = 44/207 (21%), Positives = 60/207 (28%), Gaps = 8/207 (3%)
Frame = +3
Query: 312 WXGKGHEXXEXKXXXGEXKRGXXXXGXXGGEKKRRXXFXXXXKRRGGKKKXGXXXEGGEG 491
W + E E K ++ GGE++ R ++K G E GEG
Sbjct: 117 WKKRDGEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEG 176
Query: 492 G---GXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEX----GEDGRXGXNXXGSGERR 650
G E E++ + +G G EE GE+ G G
Sbjct: 177 EEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEE 236
Query: 651 EKXXXGXXERXXEXXEGEQKGXARXGKXGXXGRXXKXKXXGEXG-XXHXGEXXXQXXERX 827
K E E E E +G G+ K + GE G GE E
Sbjct: 237 GKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEE 296
Query: 828 RXXGXAXXDGVAXXGXXXGXXXGSXRG 908
G +G G G G
Sbjct: 297 EGEGEGEEEGEGEGEEEEGEGEGEEEG 323
>BC032638-1|AAH32638.1| 411|Homo sapiens methyl-CpG binding domain
protein 2 protein.
Length = 411
Score = 34.7 bits (76), Expect = 0.82
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = +3
Query: 444 RGGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXGX 623
RGG + G + G GGG R G G G+ GR R G G+ G G
Sbjct: 55 RGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGR-GRGRPPSGGSGLGGDGGGCGG 113
Query: 624 NXXGSG--ERRE 653
G G RRE
Sbjct: 114 GGSGGGGAPRRE 125
>AF120993-1|AAD56597.1| 411|Homo sapiens methyl-CpG binding protein
2 protein.
Length = 411
Score = 34.7 bits (76), Expect = 0.82
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = +3
Query: 444 RGGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXGX 623
RGG + G + G GGG R G G G+ GR R G G+ G G
Sbjct: 55 RGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGR-GRGRPPSGGSGLGGDGGGCGG 113
Query: 624 NXXGSG--ERRE 653
G G RRE
Sbjct: 114 GGSGGGGAPRRE 125
>AF120989-1|AAD56596.1| 302|Homo sapiens testis-specific methyl-CpG
binding protein 2 protein.
Length = 302
Score = 34.7 bits (76), Expect = 0.82
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = +3
Query: 444 RGGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXGX 623
RGG + G + G GGG R G G G+ GR R G G+ G G
Sbjct: 55 RGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGR-GRGRPPSGGSGLGGDGGGCGG 113
Query: 624 NXXGSG--ERRE 653
G G RRE
Sbjct: 114 GGSGGGGAPRRE 125
>AF072242-1|AAC68871.1| 411|Homo sapiens methyl-CpG binding protein
MBD2 protein.
Length = 411
Score = 34.7 bits (76), Expect = 0.82
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = +3
Query: 444 RGGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXGX 623
RGG + G + G GGG R G G G+ GR R G G+ G G
Sbjct: 55 RGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGR-GRGRPPSGGSGLGGDGGGCGG 113
Query: 624 NXXGSG--ERRE 653
G G RRE
Sbjct: 114 GGSGGGGAPRRE 125
>X56597-1|CAA39935.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 32.3 bits (70), Expect = 4.4
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = +3
Query: 444 RGG-KKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXG 620
RGG + G GG GGG R GG G G G G G G GR
Sbjct: 15 RGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGR 74
Query: 621 XNXXGS 638
G+
Sbjct: 75 GGKRGN 80
>M59849-1|AAA52453.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 32.3 bits (70), Expect = 4.4
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = +3
Query: 444 RGG-KKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXG 620
RGG + G GG GGG R GG G G G G G G GR
Sbjct: 15 RGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGR 74
Query: 621 XNXXGS 638
G+
Sbjct: 75 GGKRGN 80
>CR457069-1|CAG33350.1| 321|Homo sapiens FBL protein.
Length = 321
Score = 32.3 bits (70), Expect = 4.4
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = +3
Query: 444 RGG-KKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXG 620
RGG + G GG GGG R GG G G G G G G GR
Sbjct: 15 RGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGR 74
Query: 621 XNXXGS 638
G+
Sbjct: 75 GGKRGN 80
>BT020144-1|AAV38946.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 32.3 bits (70), Expect = 4.4
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = +3
Query: 444 RGG-KKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXG 620
RGG + G GG GGG R GG G G G G G G GR
Sbjct: 15 RGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGR 74
Query: 621 XNXXGS 638
G+
Sbjct: 75 GGKRGN 80
>BT006830-1|AAP35476.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 32.3 bits (70), Expect = 4.4
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = +3
Query: 444 RGG-KKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXG 620
RGG + G GG GGG R GG G G G G G G GR
Sbjct: 15 RGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGR 74
Query: 621 XNXXGS 638
G+
Sbjct: 75 GGKRGN 80
>BC019260-1|AAH19260.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 32.3 bits (70), Expect = 4.4
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = +3
Query: 444 RGG-KKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXG 620
RGG + G GG GGG R GG G G G G G G GR
Sbjct: 15 RGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGR 74
Query: 621 XNXXGS 638
G+
Sbjct: 75 GGKRGN 80
>AC006950-1|AAD15623.1| 227|Homo sapiens FBRL_HUMAN [AA 1- 227]
protein.
Length = 227
Score = 32.3 bits (70), Expect = 4.4
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = +3
Query: 444 RGG-KKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXG 620
RGG + G GG GGG R GG G G G G G G GR
Sbjct: 15 RGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGR 74
Query: 621 XNXXGS 638
G+
Sbjct: 75 GGKRGN 80
>AC005393-3|AAC28913.1| 318|Homo sapiens FBRL_HUMAN protein.
Length = 318
Score = 32.3 bits (70), Expect = 4.4
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = +3
Query: 444 RGG-KKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXG 620
RGG + G GG GGG R GG G G G G G G GR
Sbjct: 12 RGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGR 71
Query: 621 XNXXGS 638
G+
Sbjct: 72 GGKRGN 77
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.304 0.133 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,367,709
Number of Sequences: 237096
Number of extensions: 672319
Number of successful extensions: 965
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 20663043518
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
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