Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_I24
(1412 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 35 0.12
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 34 0.21
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 31 1.5
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 1.5
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 1.5
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 1.5
Z82064-2|CAI79180.1| 167|Caenorhabditis elegans Hypothetical pr... 31 2.6
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 30 3.4
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 30 3.4
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 6.0
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 35.1 bits (77), Expect = 0.12
Identities = 24/90 (26%), Positives = 33/90 (36%)
Frame = +3
Query: 477 EGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXGXNXXGSGERREK 656
+GG GG + GG G Q G G G + G++G G GSG +
Sbjct: 113 QGGSSGGWGGSSRSDSGSGQGGWGGQQGGNSNAGGWGGSQGGQNG--GGGRGGSG--GQG 168
Query: 657 XXXGXXERXXEXXEGEQKGXARXGKXGXXG 746
G + + G Q G + G G G
Sbjct: 169 GWGGSQDGGSQGGWGGQNGGGQGGNQGGGG 198
Score = 30.7 bits (66), Expect = 2.6
Identities = 34/155 (21%), Positives = 41/155 (26%), Gaps = 3/155 (1%)
Frame = +3
Query: 441 RRGGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXG--XGQXGRXRXEGXGXEEXGEDGR 614
R GG+ G GG GGG G G GQ G G G + G G
Sbjct: 56 RGGGRGGSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGSSAGGWGGSQGGSQGG 115
Query: 615 XGXNXXGSGERRE-KXXXGXXERXXEXXEGEQKGXARXGKXGXXGRXXKXKXXGEXGXXH 791
GS G + G ++ G+ G GR G G
Sbjct: 116 SSGGWGGSSRSDSGSGQGGWGGQQGGNSNAGGWGGSQGGQNGGGGRGGSGGQGGWGGSQD 175
Query: 792 XGEXXXQXXERXRXXGXAXXDGVAXXGXXXGXXXG 896
G + G G G G G
Sbjct: 176 GGSQGGWGGQNGGGQGGNQGGGGGRGGNQGGEQGG 210
Score = 29.9 bits (64), Expect = 4.6
Identities = 27/120 (22%), Positives = 39/120 (32%)
Frame = +3
Query: 387 GXXGGEKKRRXXFXXXXKRRGGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGR 566
G GG++ +GG+ G G GG + GG G G+
Sbjct: 133 GGWGGQQGGNSNAGGWGGSQGGQNGGGGRGGSGGQGGWGGSQDGGSQGGWGGQNGG--GQ 190
Query: 567 XRXEGXGXEEXGEDGRXGXNXXGSGERREKXXXGXXERXXEXXEGEQKGXARXGKXGXXG 746
+G G G G G G + G + +G Q+G R G+ G G
Sbjct: 191 GGNQGGGGGRGGNQGGEQGGWGGQGGSQGGSQGG--SQGGWGNQGGQQGGGRGGQQGPGG 248
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 34.3 bits (75), Expect = 0.21
Identities = 21/66 (31%), Positives = 22/66 (33%)
Frame = +3
Query: 450 GKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXGXNX 629
G+ G GG GGG GG G G GR G G G G G
Sbjct: 56 GRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGG 115
Query: 630 XGSGER 647
G G R
Sbjct: 116 GGGGGR 121
Score = 29.5 bits (63), Expect = 6.0
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = +3
Query: 447 GGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXG 602
GG G GG GGG R GG G G+ G G G G
Sbjct: 85 GGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGGGRGRG 136
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 31.5 bits (68), Expect = 1.5
Identities = 20/59 (33%), Positives = 22/59 (37%)
Frame = +3
Query: 444 RGGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXG 620
RGG ++ G GG GGG E G G G R G G G GR G
Sbjct: 147 RGGSRRGG----GGRGGGRTNSGGEETARDTDGGERGGRGGGRRGGRGRGGRGRGGRGG 201
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 31.5 bits (68), Expect = 1.5
Identities = 24/102 (23%), Positives = 40/102 (39%)
Frame = +3
Query: 441 RRGGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXG 620
+RGG G GG+GG + + GG G G G + +G G G+ G G
Sbjct: 234 QRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQG-GWGGPQQQQGGGG--WGQQGGGG 290
Query: 621 XNXXGSGERREKXXXGXXERXXEXXEGEQKGXARXGKXGXXG 746
G +++++ G ++ +G + G G G
Sbjct: 291 QGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGWGGQSG 332
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.5 bits (68), Expect = 1.5
Identities = 24/102 (23%), Positives = 40/102 (39%)
Frame = +3
Query: 441 RRGGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXG 620
+RGG G GG+GG + + GG G G G + +G G G+ G G
Sbjct: 196 QRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQG-GWGGPQQQQGGGG--WGQQGGGG 252
Query: 621 XNXXGSGERREKXXXGXXERXXEXXEGEQKGXARXGKXGXXG 746
G +++++ G ++ +G + G G G
Sbjct: 253 QGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGWGGQSG 294
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 31.5 bits (68), Expect = 1.5
Identities = 24/102 (23%), Positives = 40/102 (39%)
Frame = +3
Query: 441 RRGGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXG 620
+RGG G GG+GG + + GG G G G + +G G G+ G G
Sbjct: 234 QRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQG-GWGGPQQQQGGGG--WGQQGGGG 290
Query: 621 XNXXGSGERREKXXXGXXERXXEXXEGEQKGXARXGKXGXXG 746
G +++++ G ++ +G + G G G
Sbjct: 291 QGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGWGGQSG 332
>Z82064-2|CAI79180.1| 167|Caenorhabditis elegans Hypothetical
protein W02B9.2 protein.
Length = 167
Score = 30.7 bits (66), Expect = 2.6
Identities = 19/63 (30%), Positives = 22/63 (34%)
Frame = +3
Query: 465 GXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXGXNXXGSGE 644
G GG GGG ++ GG G G R G + G GR G G G
Sbjct: 79 GPDNNGGRGGG----RGGDRGGDRGGDRGGDRGGDRGGDRGGDRGGRRGRGGYRDGGGGR 134
Query: 645 RRE 653
E
Sbjct: 135 GEE 137
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 30.3 bits (65), Expect = 3.4
Identities = 21/66 (31%), Positives = 23/66 (34%)
Frame = +3
Query: 444 RGGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXGX 623
RGG + G GG GGG GG G + G R G G D R G
Sbjct: 194 RGGDRYGGDRRGGGGGGGGDR---------YGGGGGDRYGGDRYGGGGGRRGSPDRRGGF 244
Query: 624 NXXGSG 641
G G
Sbjct: 245 RSGGGG 250
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 30.3 bits (65), Expect = 3.4
Identities = 25/97 (25%), Positives = 27/97 (27%)
Frame = +3
Query: 447 GGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXGEDGRXGXN 626
GG+ G GG GGG GG G G G G G G G
Sbjct: 83 GGRGDWGGNGGGGRGGGGRGDWGGNNN---GGGGNWGGGGNNDGGWGGNNGGGGGGRGGG 139
Query: 627 XXGSGERREKXXXGXXERXXEXXEGEQKGXARXGKXG 737
G R G + G G R G G
Sbjct: 140 GRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGGG 176
Score = 29.9 bits (64), Expect = 4.6
Identities = 29/113 (25%), Positives = 35/113 (30%), Gaps = 11/113 (9%)
Frame = +3
Query: 444 RGGKKKXGXXXEGGEGGGXXEXXXXEKRXXXGGXGXGQXGRXRXEGXGXEEXG------- 602
RGG + G GGG + G G G+ G R + G G
Sbjct: 59 RGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNGGGGRGGGGRGDWGGNNNGGGGNWGGG 118
Query: 603 --EDGRXGXNXXGSGERREKXXXGXXERXXEXXE--GEQKGXARXGKXGXXGR 749
DG G N G G R G R G+ G G+ G GR
Sbjct: 119 GNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGR 171
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.5 bits (63), Expect = 6.0
Identities = 35/137 (25%), Positives = 38/137 (27%), Gaps = 1/137 (0%)
Frame = +3
Query: 339 EXKXXXGEXKRGXXXXGXXGGEKKRRXXFXXXXKRRGGKKKXGXXXEGGEGGGXXEXXXX 518
E K + G G G RR R G G GG GG
Sbjct: 211 ELKQLKKQKSEGVEHRGRSGSPGGRRGHGGRHGSRSGSP--GGRHGHGGHGGHGSRSGSP 268
Query: 519 EKRXXXGGXGXGQXGRXRXEG-XGXEEXGEDGRXGXNXXGSGERREKXXXGXXERXXEXX 695
R GG G + GR G G GR G G R G R
Sbjct: 269 GGRHGHGGSGHHRGGRHGGHGRHGSCSGSPRGRHGHGGHGGHGSRSGSPGG---RHGHGG 325
Query: 696 EGEQKGXARXGKXGXXG 746
G +G R G G G
Sbjct: 326 SGHHRG-GRHGGHGRHG 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.304 0.133 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,484,971
Number of Sequences: 27780
Number of extensions: 85541
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4016977708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
- SilkBase 1999-2023 -