Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_I22
         (995 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.063
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.11 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.063
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -2

Query: 802 PPPPPPXPXXXGXXXXXFXPPPPXPGGG 719
           PPPPPP P   G       PPPP    G
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 802 PPPPPPXPXXXGXXXXXFXPPP 737
           PPPPPP P         + P P
Sbjct: 776 PPPPPPPPAVSAGGSRYYAPAP 797



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -2

Query: 802 PPPPPPXPXXXGXXXXXFXPPPP 734
           PPPPPP P         +  P P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -2

Query: 802 PPPPPPXPXXXGXXXXXFXPPPPXPG 725
           PPPPPP P   G       PPPP PG
Sbjct: 9   PPPPPPPP---GFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,924
Number of Sequences: 5004
Number of extensions: 18267
Number of successful extensions: 205
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)