Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_I14
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    28   2.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   6.4  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   8.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   8.5  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   8.5  

>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -2

Query: 493 SSAGCSAPRPQLASACRPSLAPLSTRVPNCRRCVPAGACASSRRPPPAEHPALQPFRRS- 317
           SS   SAP    A +   S   +   +P+    +P+   AS    PP  H  + P  +S 
Sbjct: 274 SSVATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAYSASVSSQPPLTHSYVHPGPQSH 333

Query: 316 KIRLPAGP 293
           K  L +GP
Sbjct: 334 KYSLSSGP 341


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -2

Query: 502 GDCSSAGCSAPRPQLASACRPSLAPLSTRV--PNCRRCVPAGACASSRRPPPAEHPALQP 329
           G  SS   S PRP    +  P++   S     P   R   A   A+ +RPPP   P+   
Sbjct: 262 GTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPS--- 318

Query: 328 FRRSKIRLPAG 296
            RR++ + P G
Sbjct: 319 -RRNRGKPPIG 328


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 263 VHTIFPKKKIRFLESSPLSLKVRSLHGTFGKINT 162
           V  ++ KK+    +  PL L  +  HG FGK+NT
Sbjct: 771 VKQLYSKKR----QGKPLKLSGKMAHGLFGKVNT 800


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 571 CAERRVRAHKVLLGACSPLFRRIFSE 648
           C +RR RA +V  G C  L+ R F E
Sbjct: 916 CQQRRGRAGRVKKGICYKLYTRGFEE 941


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 464 WARSTTACAGTITRRTYYAPSKL 532
           WA S   CA T  ++ ++ P ++
Sbjct: 320 WAHSVRGCAATFNKKNFFIPGEV 342


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 647  SLNIRRKSGLHAPKSTLWARTRRSAQTRVTSTSVSACSRASKERS 513
            SL+    SGL +  ST+ + TR  + +   STS SA  R+S   S
Sbjct: 984  SLSSSTTSGLTSSSSTIPSSTRSESNSESASTS-SASKRSSSSTS 1027


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 511 LLRSFEALLHAETLVDVTLVCAERRVRAHKVLLGACSPLFRRI 639
           +L S+E   + ++  DVT+ C      +HK +L A S   R++
Sbjct: 607 ILTSYEN--YKQSFSDVTIYCGTSMFHSHKFILCARSSFLRKL 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,755
Number of Sequences: 5004
Number of extensions: 61934
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)