Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_I14
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     100   4e-23
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          94   2e-21
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      44   2e-06
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   2.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 99.5 bits (237), Expect = 4e-23
 Identities = 46/101 (45%), Positives = 62/101 (61%)
 Frame = +1

Query: 460 VVGEEHYSLRWNNHQAHLLRSFEALLHAETLVDVTLVCAERRVRAHKVLLGACSPLFRRI 639
           +V  +H+ LRWNN+Q+ +  +FE L   E  VDVTL C  R ++AH+V+L ACSP FR +
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFREL 60

Query: 640 FSENPCKHPVIVLKDFQRMGSAGGGRXMYRGEVSVAQEQLA 762
               PCKHPVIVL+D            +Y GEV+V Q  L+
Sbjct: 61  LKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLS 101


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 93.9 bits (223), Expect = 2e-21
 Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
 Frame = +1

Query: 472 EHYSLRWNNHQAHLLRSFEALLHAETLVDVTLVCAERRVRAHKVLLGACSPLFRRIFSEN 651
           +HY LRWNN+Q+++   F  LL  E  VDVTL C E  ++AHKV+L ACS  F+++   N
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 652 PCKHPVIVL-KDFQRMGSAGGGRXMYRGEVSVAQEQL 759
           PCKHP I++ +D            +YRGE+ V+Q +L
Sbjct: 69  PCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAEL 105


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = +1

Query: 460 VVGEEHYSLRWNNHQAHLLRSFEALLHAETLVDVTLVC 573
           +V  +H+ LRWNN+Q+ +  +FE L   E  VDVTL C
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLAC 38


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
 Frame = -2

Query: 445 RPSLAPLSTRV---PNCRRCVPAGACASSRRPPP--AEHPALQPFRR 320
           R  +AP+  R    PN   C P  AC  +  P P   +   LQ F +
Sbjct: 194 RDKVAPILVRARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSK 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,382
Number of Sequences: 438
Number of extensions: 4788
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)