Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_I11
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    27   2.8  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   6.5  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    26   8.6  

>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 430 IHDKKT*VLYTLTTPYQKLRYF 365
           +H + T  LYT+ TP+ +L YF
Sbjct: 245 LHTQSTDKLYTIWTPFSELHYF 266


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 646  ISQHQSNYSIN--IKLTCTNRFSTPFCYIASQYQNR 545
            +S H +N  I+  I L   NR+  P  YI+S Y++R
Sbjct: 1458 LSAHLANNMIDMYINLPSNNRYRRPANYISSGYKSR 1493


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 765 NRMNKRCLEQYGRFV 721
           N  NKRCLE +G FV
Sbjct: 218 NGWNKRCLENFGPFV 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,597
Number of Sequences: 5004
Number of extensions: 48935
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)