Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_I09
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 207 9e-54
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 33 0.21
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 30 1.9
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical ... 29 4.5
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical pr... 28 7.8
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 207 bits (505), Expect = 9e-54
Identities = 100/161 (62%), Positives = 120/161 (74%), Gaps = 2/161 (1%)
Frame = +2
Query: 89 MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 268
MTNSKG RRGTR +FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 269 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 448
TGR++NVT A+G+IVNKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+ K AK
Sbjct: 61 TGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAK 120
Query: 449 AAGKTV-NLKRQPAPPKAAH-IVSGTEKPVLLAPIPYEFVA 565
+AG+ V LKR P P+ AH + + +P LLAP+ +E VA
Sbjct: 121 SAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIVA 161
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.21
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 273 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 136
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 33.5 bits (73), Expect = 0.21
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 273 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 136
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.21
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 273 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 136
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 190 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 327
Q RHC Q C S Y W+ RSRV +C+ + Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 467 NLKRQPAPPKAAHIVSGTE 523
NL+R+PAPPK H+ S E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480
>AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical
protein Y80D3A.9 protein.
Length = 279
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 532 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 446
DG LS D+ RG+WL + G G L
Sbjct: 39 DGMLSGVDEKDVARGTWLGMDAHGKVGML 67
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 365 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 541
VE+V + K+N++ K++++ T ++ PAPP+ +V EKPV A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418
Query: 542 PI 547
P+
Sbjct: 419 PV 420
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -2
Query: 427 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSHVVHAT 272
LILFD+LK VL ++GVL + I+ L A L +TE + + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -2
Query: 427 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSHVVHAT 272
LILFD+LK VL ++GVL + I+ L A L +TE + + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251
>Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical
protein R186.1 protein.
Length = 276
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 532 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 446
DG LS D + RG+WL L +G G +
Sbjct: 39 DGILSGVDKQENARGTWLGLNENGRIGMM 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,788,238
Number of Sequences: 27780
Number of extensions: 275648
Number of successful extensions: 1001
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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