Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_I08
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   0.70 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.70 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   1.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.9  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -2

Query: 528  GGXFXGXXXPPPPPPPXXXKXXPPXGXXXFXXPXXGGP 415
            G        PPPPPP    K  PP        P  G P
Sbjct: 1873 GSDLSNQAAPPPPPPMALPKAGPPSAAPTSALPPAGPP 1910


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 512 PKKXPPPPGXXGXXLGPPPP 571
           P   PPPPG  G    PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 501 PPPPPPPXXXKXXPP 457
           PPPPPPP      PP
Sbjct: 762 PPPPPPPGVAGAGPP 776



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 546 PXXPGGGGXFXGXXXPPPPPPP 481
           P  P   G       PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 537 PGGGGXFXGXXXPPPPPPP 481
           P  G    G   PPPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPP 313


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/58 (29%), Positives = 17/58 (29%)
 Frame = +1

Query: 484 GGGGGGXXXPXKXPPPPXGXGGXFGXXXXXXXXXXXXXXXGXGGXXXPXXXGGXXXXP 657
           GGG GG       PPP  G  G FG               G G        GG    P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 501 PPPPPPPXXXKXXPPXG 451
           PPPPPP    +  PP G
Sbjct: 312 PPPPPPSRRNRGKPPIG 328


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 512 PKKXPPPPGXXGXXLGPPPP 571
           P   PPPPG       PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 546 PXXPGGGGXFXGXXXPPPPPPPXXXK 469
           P  P     F     PPPPPPP   K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVK 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,145
Number of Sequences: 5004
Number of extensions: 19174
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)