Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_I07
         (1047 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.067
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   2.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.067
 Identities = 17/36 (47%), Positives = 17/36 (47%)
 Frame = +3

Query: 72  PXGPXGXGXPPPXGPXGGGGXKTXPXFXPPPPXPPP 179
           P  P   G PPP  P G  G    P   PPPP PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAG--AGP---PPPPPPPP 783



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 102 PPXGPXGGGGXKTXPXFXPPPPXPPPG 182
           PP  P  GG         PPPP PPPG
Sbjct: 752 PPPAPIMGG---------PPPPPPPPG 769


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +3

Query: 93  GXPPPXGPXGGGGXKTXPXFXPPPPXPPPG 182
           G PPP  P  G      P   PPPP PPPG
Sbjct: 7   GNPPPPPPPPG----FEPPSQPPPP-PPPG 31



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 144 PXFXPPPPXPPPG 182
           P   PPPP PPPG
Sbjct: 5   PPGNPPPPPPPPG 17


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 144 PXFXPPPPXPPP 179
           P F PPPP PPP
Sbjct: 942 PAFPPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,516
Number of Sequences: 5004
Number of extensions: 17364
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 549226150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)