Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_I03
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1201 - 11419851-11419913,11420090-11420311                       32   0.69 
12_02_1188 + 26801833-26802225                                         31   1.6  
10_08_0223 - 15986763-15987575                                         31   1.6  
01_01_1008 - 7987936-7988628,7988923-7989102                           31   1.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.5  
01_01_0684 + 5255634-5256029,5256222-5256326                           28   8.5  

>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +1

Query: 544 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIPVR-LSPLRE 714
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R P   L P R 
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPSRV 72

Query: 715 A 717
           A
Sbjct: 73  A 73


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 706 GEKGGQVSGKRQGRNRRAHEGAXQGETPGIFIVLSG 599
           G  GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 30  GGGGGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>10_08_0223 - 15986763-15987575
          Length = 270

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
 Frame = -1

Query: 724 ATTLPEGEKGGQVSGKRQGRNRRAHEGAXQGE-TPGIFIVLSGFATS--DLSVDFCDARQ 554
           AT   EG  GG   G   G    A  G  QG    G  I ++   +S  D +  + DA  
Sbjct: 133 ATGDGEGGGGGGGGGSNGGSGYGAGAGVGQGAGESGSSIAMAPSPSSGGDYNGGYADAAG 192

Query: 553 GGGA----YGKTPATRPFYGSWPFAG 488
           GGG     +G  PA  P YG    AG
Sbjct: 193 GGGGGGGGHGGGPAASPSYGVGAGAG 218


>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 697 GGQVSGKRQGRNRRAHEGAXQGETPG 620
           GG+V+G+   R+RR   GA +GE  G
Sbjct: 249 GGEVNGEEAARSRRRRRGAWEGEEEG 274


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 304 NESAN---ARGEAVCVLGALPLPRSLTRCAR 387
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>01_01_0684 + 5255634-5256029,5256222-5256326
          Length = 166

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 730 EKATTLPEGEKGGQVSGKRQGRNRRAHEGAXQGETPG 620
           E    + EGE+GG+   KR+   RR  +GA   +  G
Sbjct: 45  EAGAGVAEGEEGGRERRKRRKARRRQRKGAGDDDAAG 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,454,520
Number of Sequences: 37544
Number of extensions: 473683
Number of successful extensions: 1310
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)