Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H23
         (926 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.9  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   5.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   9.1  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 453 ETEKTFGFPLDIKLQYENKK 512
           E E  FG PL+  L+Y +K+
Sbjct: 499 EVEYVFGHPLNKSLKYSDKE 518


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 353 SVFYTYALNVKCNCE 309
           S F T  +++KCNC+
Sbjct: 19  SYFVTPTMSIKCNCK 33


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = -2

Query: 541 PSLWPNATTTFLFSYC----NLISRGNPNVFS 458
           P +W +A T   FSY      L++ G+ N F+
Sbjct: 277 PEVWIDAVTQIFFSYALGLGALVALGSYNKFN 308


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = -2

Query: 541 PSLWPNATTTFLFSYC----NLISRGNPNVFS 458
           P +W +A T   FSY      L++ G+ N F+
Sbjct: 330 PEVWIDAVTQIFFSYALGLGALVALGSYNKFN 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,046
Number of Sequences: 438
Number of extensions: 4314
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)