Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H22
         (989 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.44 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.58 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.58 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   1.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   1.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   6.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.1  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
 Frame = -3

Query: 534 PXPPPP----PTPXXSXYXGGGXXKRTGGGXGXPPXPPPSXKXXPPPPXGXXXXPPPXXS 367
           P PPPP    PTP  +           GG    PP PP      PPPP      PPP  S
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP-PPPPPPGVAGAGPPPP----PPPPPAVS 786



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 527 PPPPPPPXXLCXXGGXGXKERGGGXXXPPPXPPP 426
           PPPPPPP  +   G             PPP PPP
Sbjct: 761 PPPPPPPPGVAGAG-------------PPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 17/49 (34%), Positives = 17/49 (34%)
 Frame = -1

Query: 629 TPXTXTKXXPXPXRGXGGPXXXXVIYFXXGXXXXPPPPPPPXXLCXXGG 483
           TP       P P    GGP          G    PPPPPPP      GG
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG--PPPPPPPPPAVSAGG 789


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = -1

Query: 527 PPPPPPPXXLCXXGGXGXKERGGGXXXPPPXPPPXXXN 414
           PPPPPPP       G      G      PP PPP   N
Sbjct: 311 PPPPPPPSR--RNRGKPPIGNGSSNSSLPPPPPPPRSN 346



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
 Frame = -3

Query: 615 NKXXXXPPPRGGGXXXXGCXLFXXRXXPXPPPPPTPXXSXYXGGGXXKRTGGGXGXPPXP 436
           NK    PPP           +         PPPP P  S   G       G     PP P
Sbjct: 307 NKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366

Query: 435 --PPSXKXXPPP 406
              PS    PPP
Sbjct: 367 RSAPSTGRQPPP 378



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
 Frame = -3

Query: 543 RXXPXPPPPPTPXXSXYXGGGXXKRTGGGXGXPPXPPP---SXKXXPPPPXGXXXXPPP 376
           R  P PPP          G G    +      PP PPP   +    P PP G    PPP
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNG----SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -3

Query: 528 PPPPPTPXXSXYXGGGXXKRTGGGXGXPPXPPPSXKXXPPPPXG 397
           P PPP+   S        KR       PP PPPS +    PP G
Sbjct: 291 PLPPPSSRVSAAALAANKKRP------PPPPPPSRRNRGKPPIG 328



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 524 PPPPPPXXLCXXGGXGXKERGGGXXXPPPXPP 429
           PPPPPP      G      +  G   PPP PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQ--GRSAPPPPPP 366



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = -3

Query: 534 PXPPPPPTPXXSXYXGGGXXKRTGGGXGXPPXPPPSXKXXPPPPXGXXXXPP 379
           P PP  P                 G    PP PP S    PP P G    PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP-SAPIAPPLPAGMPAAPP 468


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
 Frame = -3

Query: 534  PXPPPPPTPXXSXYXGGGXXKRTGGGXGXPPXPPPS-XKXXPPPPXGXXXXPPP 376
            P    PP P  S     G         G PP PPPS     P P  G    PPP
Sbjct: 1164 PSVAAPPVPAPS----SGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/56 (26%), Positives = 16/56 (28%)
 Frame = -3

Query: 534  PXPPPPPTPXXSXYXGGGXXKRTGGGXGXPPXPPPSXKXXPPPPXGXXXXPPPXXS 367
            P P P P+                   G PP P PS    P P       P P  S
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPS 1118



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
 Frame = -3

Query: 453  GXPPXPPPSXKXXP-PPPXGXXXXPPP 376
            G PP P PS    P P P G    P P
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKP 1164



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 453  GXPPXPPPSXKXXPPPPXGXXXXPP 379
            G PP PPPS    PP P      PP
Sbjct: 1206 GVPPVPPPS--TAPPVPTPSAGLPP 1228


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect(2) = 1.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 527 PPPPPPPXXL 498
           PPPPPPP  L
Sbjct: 370 PPPPPPPPEL 379



 Score = 21.8 bits (44), Expect(2) = 1.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 446 PPPXPPPXXXN 414
           PPP PPP   N
Sbjct: 371 PPPPPPPELLN 381


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect(2) = 1.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 542 GXXXXPPPPPPP 507
           G    PPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314



 Score = 21.8 bits (44), Expect(2) = 1.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 446 PPPXPPPXXXN 414
           PPP PPP   N
Sbjct: 306 PPPPPPPPPSN 316


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/55 (27%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
 Frame = -3

Query: 534 PXPPPPPTPXXSXYXGGGXXKRT--GGGXGXPPXPPPSXKXXPPPPXGXXXXPPP 376
           P PPPPP P                  G    P  PP+       P      PPP
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPP 243


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 527 PPPPPPPXXLCXXGG 483
           PPPPPPP  +   GG
Sbjct: 946 PPPPPPPPLVSAAGG 960



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 527 PPPPPPPXXLCXXGG 483
           PPPPPPP  L    G
Sbjct: 945 PPPPPPPPPLVSAAG 959


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.8 bits (49), Expect(2) = 6.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 527  PPPPPPP 507
            PPPPPPP
Sbjct: 1095 PPPPPPP 1101



 Score = 20.6 bits (41), Expect(2) = 6.4
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 446  PPPXPPP 426
            PPP PPP
Sbjct: 1096 PPPPPPP 1102


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
 Frame = -3

Query: 447  PPXPP---PSXKXXPPPPXGXXXXPPP 376
            PP PP   P     PP P G    PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = -3

Query: 534 PXPPPPPTPXXSXYXGGGXXKRTGGGXGXPPXPPPSXKXXPPPP 403
           P PPP      S Y  G     T      P   PP     PP P
Sbjct: 189 PVPPPRRVSQNSSYASGSVPAATAASTASPVKKPP--PPAPPKP 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,813
Number of Sequences: 5004
Number of extensions: 30762
Number of successful extensions: 269
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)