Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_H20
(1498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 36 0.063
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 27 5.6
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 25 6.0
02_01_0162 - 1126273-1126593,1126950-1127117,1127211-1127501,112... 25 6.2
03_05_0067 - 20460206-20460703,20461255-20461530 29 7.2
02_05_0686 - 30900748-30902167,30903442-30904742 24 7.7
07_03_1071 + 23753883-23754752 25 8.5
07_03_1382 - 26170563-26170631,26171151-26171843 24 8.7
03_01_0515 - 3864796-3865425 24 8.8
05_01_0131 + 888247-888771,889092-889154 24 8.9
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160... 29 9.5
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 36.3 bits (80), Expect = 0.063
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 861 FXXXXPPPPXXXXXXXPPPPPXXFFFFXXXGGG 763
F PPPP PPPPP F ++ GGG
Sbjct: 63 FAAAPPPPPAAFFAAVPPPPPPPFEYYPAVGGG 95
Score = 33.9 bits (74), Expect = 0.33
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 866 IFXXXXPXPPPXXXXXXPPPXPPXXFFFXXXGGGG 762
+F P PP PPP PP ++ GGGG
Sbjct: 62 VFAAAPPPPPAAFFAAVPPPPPPPFEYYPAVGGGG 96
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = -3
Query: 848 PXPPPXXXXXX--PPPXPPXXFFFXXXGGGG 762
P PPP PPP PP ++ GGGG
Sbjct: 67 PPPPPAAFFAAVPPPPPPPFEYYPAVGGGGG 97
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 26.6 bits (56), Expect(2) = 5.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 1284 PPPPPPPP 1261
PPPPPPPP
Sbjct: 1931 PPPPPPPP 1938
Score = 21.4 bits (43), Expect(2) = 5.6
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -2
Query: 1281 PPPPPPPXXXXF 1246
PPPPPP F
Sbjct: 1951 PPPPPPEAKKSF 1962
>05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 24.6 bits (51), Expect(2) = 6.0
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 1281 PPPPPPPXXXXF 1246
PPPPPPP F
Sbjct: 4 PPPPPPPPRRDF 15
Score = 23.4 bits (48), Expect(2) = 6.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 1284 PPPPPPPP 1261
P PPPPPP
Sbjct: 2 PAPPPPPP 9
>02_01_0162 - 1126273-1126593,1126950-1127117,1127211-1127501,
1127688-1127763,1127841-1127886,1128006-1128072,
1128162-1128234,1128321-1128561,1128669-1128822,
1128915-1129042,1129481-1129535,1129629-1129838
Length = 609
Score = 24.6 bits (51), Expect(2) = 6.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 1281 PPPPPPPXXXXF 1246
PPPPPPP F
Sbjct: 581 PPPPPPPQMELF 592
Score = 23.4 bits (48), Expect(2) = 6.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 1284 PPPPPPPP 1261
P PPPPPP
Sbjct: 579 PAPPPPPP 586
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 29.5 bits (63), Expect = 7.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 846 PPPPXXXXXXXPPPPPXXFF 787
PPPP PPPPP +F
Sbjct: 14 PPPPPQYFQAGPPPPPPQYF 33
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 23.8 bits (49), Expect(2) = 7.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1284 PPPPPPP 1264
PPPPPPP
Sbjct: 313 PPPPPPP 319
Score = 23.8 bits (49), Expect(2) = 7.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1284 PPPPPPP 1264
PPPPPPP
Sbjct: 326 PPPPPPP 332
Score = 23.8 bits (49), Expect(2) = 7.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1281 PPPPPPP 1261
PPPPPPP
Sbjct: 326 PPPPPPP 332
Score = 23.8 bits (49), Expect(2) = 7.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1281 PPPPPPP 1261
PPPPPPP
Sbjct: 364 PPPPPPP 370
>07_03_1071 + 23753883-23754752
Length = 289
Score = 25.0 bits (52), Expect(2) = 8.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 772 PXXKKKKXXGGXGGG 816
P KKKK GG GGG
Sbjct: 19 PEAKKKKQGGGGGGG 33
Score = 22.6 bits (46), Expect(2) = 8.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 799 GGXGGGXXXXXXGGGXG 849
GG GGG GGG G
Sbjct: 66 GGAGGGGAPGEGGGGGG 82
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 23.8 bits (49), Expect(2) = 8.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1284 PPPPPPP 1264
PPPPPPP
Sbjct: 184 PPPPPPP 190
Score = 23.8 bits (49), Expect(2) = 8.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1281 PPPPPPP 1261
PPPPPPP
Sbjct: 200 PPPPPPP 206
>03_01_0515 - 3864796-3865425
Length = 209
Score = 23.8 bits (49), Expect(2) = 8.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1284 PPPPPPP 1264
PPPPPPP
Sbjct: 71 PPPPPPP 77
Score = 23.8 bits (49), Expect(2) = 8.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1281 PPPPPPP 1261
PPPPPPP
Sbjct: 89 PPPPPPP 95
>05_01_0131 + 888247-888771,889092-889154
Length = 195
Score = 23.8 bits (49), Expect(2) = 8.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1284 PPPPPPP 1264
PPPPPPP
Sbjct: 133 PPPPPPP 139
Score = 23.8 bits (49), Expect(2) = 8.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1281 PPPPPPP 1261
PPPPPPP
Sbjct: 160 PPPPPPP 166
>02_04_0567 -
23914330-23914461,23915016-23915136,23915954-23916048,
23916131-23916301,23917291-23917380,23917636-23918139
Length = 370
Score = 29.1 bits (62), Expect = 9.5
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -3
Query: 869 FIFXXXXPXPPPXXXXXXPPPXPP 798
F F P PPP PPP PP
Sbjct: 33 FTFLCPPPPPPPPPPPPPPPPPPP 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,015,502
Number of Sequences: 37544
Number of extensions: 638833
Number of successful extensions: 35942
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23431
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4791670604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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