Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_H20
(1498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 0.65
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 0.65
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 0.67
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr... 25 6.9
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 24 6.9
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 8.5
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 26.6 bits (56), Expect(2) = 0.65
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 1284 PPPPPPPP 1261
PPPPPPPP
Sbjct: 758 PPPPPPPP 765
Score = 24.6 bits (51), Expect(2) = 0.65
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 1281 PPPPPPPXXXXF 1246
PPPPPPP F
Sbjct: 769 PPPPPPPPPGGF 780
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1284 PPPPPPP 1264
PPPPPPP
Sbjct: 726 PPPPPPP 732
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1284 PPPPPPP 1264
PPPPPPP
Sbjct: 742 PPPPPPP 748
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1281 PPPPPPP 1261
PPPPPPP
Sbjct: 742 PPPPPPP 748
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1281 PPPPPPP 1261
PPPPPPP
Sbjct: 784 PPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 26.6 bits (56), Expect(2) = 0.65
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 1284 PPPPPPPP 1261
PPPPPPPP
Sbjct: 758 PPPPPPPP 765
Score = 24.6 bits (51), Expect(2) = 0.65
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 1281 PPPPPPPXXXXF 1246
PPPPPPP F
Sbjct: 769 PPPPPPPPPGGF 780
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1284 PPPPPPP 1264
PPPPPPP
Sbjct: 726 PPPPPPP 732
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1284 PPPPPPP 1264
PPPPPPP
Sbjct: 742 PPPPPPP 748
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1281 PPPPPPP 1261
PPPPPPP
Sbjct: 742 PPPPPPP 748
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1281 PPPPPPP 1261
PPPPPPP
Sbjct: 784 PPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 26.6 bits (56), Expect(2) = 0.67
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 1284 PPPPPPPP 1261
PPPPPPPP
Sbjct: 341 PPPPPPPP 348
Score = 24.6 bits (51), Expect(2) = 0.67
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 1281 PPPPPPPXXXXF 1246
PPPPPPP F
Sbjct: 352 PPPPPPPPPGGF 363
Score = 23.8 bits (49), Expect(2) = 6.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1284 PPPPPPP 1264
PPPPPPP
Sbjct: 309 PPPPPPP 315
Score = 23.8 bits (49), Expect(2) = 6.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1284 PPPPPPP 1264
PPPPPPP
Sbjct: 325 PPPPPPP 331
Score = 23.8 bits (49), Expect(2) = 6.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1281 PPPPPPP 1261
PPPPPPP
Sbjct: 325 PPPPPPP 331
Score = 23.8 bits (49), Expect(2) = 6.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1281 PPPPPPP 1261
PPPPPPP
Sbjct: 367 PPPPPPP 373
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 26.6 bits (56), Expect(2) = 5.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 846 PPPPXXXXXXXPPPPP 799
PPPP PPPPP
Sbjct: 540 PPPPVGMANGGPPPPP 555
Score = 21.4 bits (43), Expect(2) = 5.2
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -2
Query: 813 PPPPPXXFFFF 781
PPPPP F F
Sbjct: 579 PPPPPPPSFMF 589
>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical protein
K02E2.2 protein.
Length = 1021
Score = 24.6 bits (51), Expect(2) = 6.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 1281 PPPPPPPXXXXF 1246
PPPPPPP F
Sbjct: 792 PPPPPPPFLTCF 803
Score = 23.0 bits (47), Expect(2) = 6.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 1284 PPPPPPPP 1261
PPPPP PP
Sbjct: 786 PPPPPVPP 793
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 23.8 bits (49), Expect(2) = 6.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1284 PPPPPPP 1264
PPPPPPP
Sbjct: 122 PPPPPPP 128
Score = 23.8 bits (49), Expect(2) = 6.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1281 PPPPPPP 1261
PPPPPPP
Sbjct: 138 PPPPPPP 144
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.1 bits (62), Expect = 8.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 763 PPPPXXKKKKXXGGXGGGXXXXXXGGGXG 849
PPPP GG GGG GGG G
Sbjct: 111 PPPPPPACGGGCGGGGGGCGGGCGGGGGG 139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,332,769
Number of Sequences: 27780
Number of extensions: 288858
Number of successful extensions: 8049
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4947
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4308364692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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