Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H18
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       34   0.13 
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    31   1.6  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   6.6  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 20/64 (31%), Positives = 20/64 (31%)
 Frame = -2

Query: 721 GXXPXXPGGXXGXXFXXXXXGXXXGXXXXXXXPVXGXXXXXGXPPXGGGGXXFPXLKKXX 542
           G  P  PGG  G        G   G       P  G     G PP GGGG   P      
Sbjct: 129 GARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGG 188

Query: 541 PGXG 530
            G G
Sbjct: 189 GGGG 192


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/55 (30%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
 Frame = +3

Query: 561  GXXSPPPPXGGXPXXXXXPXTGXXXXXXXPXXXPXXXXXNXXPXXPP-GXXGXXP 722
            G   PPPP GG       P  G       P   P        P  PP G  G  P
Sbjct: 1107 GAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPP 1161


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 510 PPKXVKXPXPGXXFFRXGXXSPPPPXGG 593
           PPK    P P     + G   PPPP GG
Sbjct: 358 PPKGPSPPPPPPPGGKKGGPPPPPPKGG 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,556,790
Number of Sequences: 37544
Number of extensions: 146731
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)