Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H18
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   0.84 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   0.84 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   0.84 

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 21/64 (32%), Positives = 21/64 (32%)
 Frame = +3

Query: 531 PXPGXXFFRXGXXSPPPPXGGXPXXXXXPXTGXXXXXXXPXXXPXXXXXNXXPXXPPGXX 710
           P PG      G   PPPP GG P     P TG       P   P        P  PPG  
Sbjct: 715 PPPGLPPITGGPPPPPPP-GGLP-----PITGGPPPPPPPGGLPPISGGPPPPPPPPGGC 768

Query: 711 GXXP 722
              P
Sbjct: 769 PPPP 772



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +3

Query: 531 PXPGXXFFRXGXXSPPPPXGGXPXXXXXPXTGXXXXXXXPXXXP 662
           P  G      G   PPPP GG P     P  G       P   P
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 21/64 (32%), Positives = 21/64 (32%)
 Frame = +3

Query: 531 PXPGXXFFRXGXXSPPPPXGGXPXXXXXPXTGXXXXXXXPXXXPXXXXXNXXPXXPPGXX 710
           P PG      G   PPPP GG P     P TG       P   P        P  PPG  
Sbjct: 715 PPPGLPPITGGPPPPPPP-GGLP-----PITGGPPPPPPPGGLPPISGGPPPPPPPPGGC 768

Query: 711 GXXP 722
              P
Sbjct: 769 PPPP 772



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +3

Query: 531 PXPGXXFFRXGXXSPPPPXGGXPXXXXXPXTGXXXXXXXPXXXP 662
           P  G      G   PPPP GG P     P  G       P   P
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 21/64 (32%), Positives = 21/64 (32%)
 Frame = +3

Query: 531 PXPGXXFFRXGXXSPPPPXGGXPXXXXXPXTGXXXXXXXPXXXPXXXXXNXXPXXPPGXX 710
           P PG      G   PPPP GG P     P TG       P   P        P  PPG  
Sbjct: 298 PPPGLPPITGGPPPPPPP-GGLP-----PITGGPPPPPPPGGLPPISGGPPPPPPPPGGC 351

Query: 711 GXXP 722
              P
Sbjct: 352 PPPP 355



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +3

Query: 531 PXPGXXFFRXGXXSPPPPXGGXPXXXXXPXTGXXXXXXXPXXXP 662
           P  G      G   PPPP GG P     P  G       P   P
Sbjct: 330 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,365,193
Number of Sequences: 27780
Number of extensions: 108906
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)