Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H17
         (922 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81592-10|CAB04732.1|  240|Caenorhabditis elegans Hypothetical p...   158   6e-39
AY731377-1|AAW63419.1|  240|Caenorhabditis elegans eukaryotic in...   158   6e-39
Z34799-6|CAA84317.2|  280|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AF134806-1|AAD29691.1|  280|Caenorhabditis elegans putative zinc...    31   1.5  
Z70683-6|CAA94591.2|  512|Caenorhabditis elegans Hypothetical pr...    29   6.2  

>Z81592-10|CAB04732.1|  240|Caenorhabditis elegans Hypothetical
           protein T16G1.11 protein.
          Length = 240

 Score =  158 bits (383), Expect = 6e-39
 Identities = 83/237 (35%), Positives = 133/237 (56%), Gaps = 24/237 (10%)
 Frame = +2

Query: 119 ETMKQTVASILKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLYQFNPEKFNAD 298
           E +++ +   ++ + RYNP N+  L   V+    EN YD    L +LKLYQ NPEK++  
Sbjct: 4   EKLQKELHEAIEGVNRYNPENVADLAACVQAMVNENKYDKDIVLTILKLYQLNPEKYDEA 63

Query: 299 ITCQILLKALTNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVH-- 472
           +  Q+LLK L   P +DF L KCL+  + + ++ + +I  L  +LE C+FA FW  V   
Sbjct: 64  VVRQVLLKTLMVLPSSDFALAKCLIDTNRLGSQELRRIFDLGAVLESCNFAVFWKLVKGA 123

Query: 473 ---------------QMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLANLLGGIDD 607
                          ++P++   + GF D+++ + C V+ +TFQ I+K  L+ LLGG  D
Sbjct: 124 YKPTTNPNEPFKVPGEVPKMIKPMVGFEDAVKHYACRVISVTFQKIEKKMLSRLLGGASD 183

Query: 608 VTLKHWVKKYGW--RDDGSLIFIANQDENIKTKNITEKIEFDHLAPLM-----PLTL 757
             +    + +GW  +++G + F+AN +  IKT+NI EKI+F H+A L+     PLTL
Sbjct: 184 KEVTALAQSFGWEAKENGDVFFVANHEGTIKTRNIDEKIQFPHVADLLTSIQPPLTL 240


>AY731377-1|AAW63419.1|  240|Caenorhabditis elegans eukaryotic
           initiation factor eIF-3.K protein.
          Length = 240

 Score =  158 bits (383), Expect = 6e-39
 Identities = 83/237 (35%), Positives = 133/237 (56%), Gaps = 24/237 (10%)
 Frame = +2

Query: 119 ETMKQTVASILKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLYQFNPEKFNAD 298
           E +++ +   ++ + RYNP N+  L   V+    EN YD    L +LKLYQ NPEK++  
Sbjct: 4   EKLQKELHEAIEGVNRYNPENVADLAACVQAMVNENKYDKDIVLTILKLYQLNPEKYDEA 63

Query: 299 ITCQILLKALTNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVH-- 472
           +  Q+LLK L   P +DF L KCL+  + + ++ + +I  L  +LE C+FA FW  V   
Sbjct: 64  VVRQVLLKTLMVLPSSDFALAKCLIDTNRLGSQELRRIFDLGAVLESCNFAVFWKLVKGA 123

Query: 473 ---------------QMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLANLLGGIDD 607
                          ++P++   + GF D+++ + C V+ +TFQ I+K  L+ LLGG  D
Sbjct: 124 YKPTTNPNEPFKVPGEVPKMIKPMVGFEDAVKHYACRVISVTFQKIEKKMLSRLLGGASD 183

Query: 608 VTLKHWVKKYGW--RDDGSLIFIANQDENIKTKNITEKIEFDHLAPLM-----PLTL 757
             +    + +GW  +++G + F+AN +  IKT+NI EKI+F H+A L+     PLTL
Sbjct: 184 KEVTALAQSFGWEAKENGDVFFVANHEGTIKTRNIDEKIQFPHVADLLTSIQPPLTL 240


>Z34799-6|CAA84317.2|  280|Caenorhabditis elegans Hypothetical
           protein F34D10.5 protein.
          Length = 280

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 322 FQKYLTCNVCVKLFGIKLI*LEHS*ISSQI---VCVFSGLHFDISF 194
           FQ  LTC++C K FG++ +   H    S +   +C F G  F+ +F
Sbjct: 129 FQDSLTCHICGKKFGLQRLLNRHIKCHSDLKRYLCTFCGKGFNDTF 174


>AF134806-1|AAD29691.1|  280|Caenorhabditis elegans putative zinc
           finger transcriptionfactor protein.
          Length = 280

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 322 FQKYLTCNVCVKLFGIKLI*LEHS*ISSQI---VCVFSGLHFDISF 194
           FQ  LTC++C K FG++ +   H    S +   +C F G  F+ +F
Sbjct: 129 FQDSLTCHICGKKFGLQRLLNRHIKCHSDLKRYLCTFCGKGFNDTF 174


>Z70683-6|CAA94591.2|  512|Caenorhabditis elegans Hypothetical
           protein F13B12.2 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 371 LLESVVENETISQIKYLADILEQCD---FAQFWNRVHQMPELCSRISGF-HDSIRK 526
           LL+     E I  IK+  DI +  +     ++W+ V +MPE  S  S F + SIR+
Sbjct: 233 LLQMGRYTEAIESIKFYYDIEDSDEDEIIKEYWDMVPEMPEQLSLCSAFSNSSIRR 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,764,223
Number of Sequences: 27780
Number of extensions: 358388
Number of successful extensions: 827
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)