Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H17
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.97 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   2.2  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   3.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.2  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 634 LLNPVLQCYIINTS*QICQVVFVNSLKCNTNHMTDKLSD*VMEATD 497
           + +P L  + +NTS Q+ QVV  + +  N +     L   V++A D
Sbjct: 153 MCSPKLHVFDLNTSHQLKQVVMPHDIAVNASTGNGGLVSLVVQAMD 198


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 703 ILGFNIFILISNEDKTTVIPPSILLNPVLQCYIINTS*QICQVVFVNSLKCNTN 542
           +L   +F L+  E    +IPP+ L  P+L  Y++ T   +   V V     N N
Sbjct: 275 LLSLTVFFLLLAE----IIPPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVN 324


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 399 VSFSTTDSRSKHLHNVKSVCGKLVRAFKSI 310
           VS  T D     LH V+SVC K +   + I
Sbjct: 14  VSAMTLDELKSGLHTVQSVCMKEIGTAQQI 43


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 724 KLNLLCNIL-GFNIFILISNEDKTTVIPPSILLNPVLQCYII 602
           K+ L  +IL   ++F L+  E    +IPP+ L+ P+L  Y+I
Sbjct: 275 KVTLSISILISLHVFFLLVVE----IIPPTSLVVPLLGKYLI 312


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 724 KLNLLCNIL-GFNIFILISNEDKTTVIPPSILLNPVLQCYII 602
           K+ L  +IL   ++F L+  E    +IPP+ L+ P+L  Y+I
Sbjct: 275 KVTLSISILISLHVFFLLVVE----IIPPTSLVVPLLGKYLI 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,368
Number of Sequences: 438
Number of extensions: 4251
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)