Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H16
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   226   4e-60
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    30   0.53 
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.6  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   6.5  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   8.6  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  226 bits (552), Expect = 4e-60
 Identities = 104/149 (69%), Positives = 125/149 (83%), Gaps = 1/149 (0%)
 Frame = +3

Query: 210 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 389
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 390 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 566
           L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L  FP GKP
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125

Query: 567 LNMILDDGGDLTNLVXTKYPDLLKDVKGI 653
           LNMILDDGGDLT LV  ++P+LL D++GI
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGI 154



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 673 GVHNLYKMFRE 705
           GVHNLYKMF+E
Sbjct: 161 GVHNLYKMFKE 171


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
 Frame = -2

Query: 341 YSGTFEYFSWSIFPTTCHKAWHFFLC*H------NFFSAPFSQFLVSDFVRRLHFVVQSL 180
           Y   +  ++W  F  T +K  H+FL  H      +F S   S F        LH +V   
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVYVPLNSFMSKSLSTFFTFFVSSVLHELVMGC 415

Query: 179 IYLXVNSLAVFF 144
           I L +    +FF
Sbjct: 416 ITLKIRGYGLFF 427


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +2

Query: 113 YFRYFNKNNLKRKQQV---NLPXGISNFVLQNEASLQNR*REIG*MGPKRNYVSRERNAR 283
           YF   N +N++ K++    NL   +S F    E + QN   +   +  K++ + ++RN  
Sbjct: 174 YFDVINDSNVENKEETKDRNLDRALSKFTQSREKNEQNLSSKASVLRNKKSILLKKRNQD 233

Query: 284 PYGMSSEICSS*NTQRCQNSRQLTHD 361
              +++E   S N           HD
Sbjct: 234 ETQLTTEEDFSANNDSTAKIETSIHD 259


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 71  SCARXRVLQYQVPIYFRYFNKNNLKRKQQVNLPXGISNFVLQ 196
           S  +  +L+  V  YFRY  + +LK +Q++ L   +S+  L+
Sbjct: 665 SVIQNELLRRSVDTYFRYIFQTDLKLEQRIKLLEFLSSDTLR 706


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +2

Query: 251 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 430
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 431 H 433
           H
Sbjct: 150 H 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,544
Number of Sequences: 5004
Number of extensions: 56111
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)