Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_H15
(982 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 36 0.049
09_02_0603 - 11150739-11150746,11150791-11151340 31 1.1
12_02_0299 - 17051570-17052474,17053542-17053755 31 1.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.3
08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501... 29 4.3
03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956 29 5.7
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 29 5.7
07_03_1136 + 24218601-24218734,24218769-24219906 25 6.6
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 29 7.5
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 7.5
06_03_0743 + 24069752-24070483,24071890-24072345 28 9.9
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 28 9.9
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.9 bits (79), Expect = 0.049
Identities = 28/93 (30%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Frame = -2
Query: 636 PPPPPXXXFFXXKKXXXXXPPPPPXFXFXXXXXKXXRPXPPXFXXKKXGXFFFXPPXGGP 457
PPPPP K PPPPP P PP PP GP
Sbjct: 313 PPPPPPP-----KPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPP-----PPPPKGP 362
Query: 456 XFXPPKKXXXXXGGXXXTPPXXG--XPPXXGGI 364
PP GG PP G PP G+
Sbjct: 363 SPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGV 395
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 31.5 bits (68), Expect = 1.1
Identities = 17/58 (29%), Positives = 17/58 (29%)
Frame = -2
Query: 636 PPPPPXXXFFXXKKXXXXXPPPPPXFXFXXXXXKXXRPXPPXFXXKKXGXFFFXPPXG 463
PPPPP F PPPP F P PP F P G
Sbjct: 44 PPPPPPGSTFVPLPQSGVPPPPPLGSFFVPPPQSRVPPPPPQLGVPPLPQFGMMPQYG 101
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 30.7 bits (66), Expect = 1.9
Identities = 26/87 (29%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Frame = -2
Query: 636 PPPPPXXXFFXXKKXXXXXP-PPPPXFXFXXXXXKXXRPXPPXFXXKKXGXFFFXPPXGG 460
PPPPP F P PPPP F F PP F F PP
Sbjct: 234 PPPPPFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPW--APPPAF------PFPHLPPIFS 285
Query: 459 PXFXPPKKXXXXXGGXXXTPPXXGXPP 379
P PP PP PP
Sbjct: 286 PPSPPPPPPPAFPFPFPQLPPLPHFPP 312
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 4.3
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = -2
Query: 636 PPPPPXXXFFXXKKXXXXXPPPPPXFXFXXXXXKXXRPXPP 514
PPPPP + PPPPP P PP
Sbjct: 602 PPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPP 642
>08_02_0758 +
20848078-20849579,20849660-20849850,20849944-20850179,
20850254-20850973
Length = 882
Score = 29.5 bits (63), Expect = 4.3
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = -1
Query: 637 PPPPXXFXFFXXKKKXXGXPPPPPPFXFXXXXXKKXEAXP 518
PPPP K + G PPPPPP K P
Sbjct: 431 PPPPQKNPPPNLKGQCYGQPPPPPPLPLQIQVGKDGSPLP 470
>03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956
Length = 397
Score = 29.1 bits (62), Expect = 5.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 636 PPPPPXXXFFXXKKXXXXXPPPPP 565
PPPPP ++ PPPPP
Sbjct: 360 PPPPPPPVYYSSYVMLDRPPPPPP 383
Score = 28.7 bits (61), Expect = 7.5
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -2
Query: 636 PPPPPXXXFFXXKKXXXXXPPPPPXFXF 553
PPPPP + PPPPP F
Sbjct: 359 PPPPPPPPVYYSSYVMLDRPPPPPPQLF 386
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 29.1 bits (62), Expect = 5.7
Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Frame = -2
Query: 636 PPPPPXXXFFXXKKXXXXXPPPPPXF------XFXXXXXKXXRPXPPXFXXKKXGXFFFX 475
PPPPP PPPPP F + P PP KK
Sbjct: 111 PPPPPPPHLLHYYGHPPPPPPPPPPFKGDHYGGVYQNWQQNGPPPPPDHVLKKVPSHPSP 170
Query: 474 PPXGGP 457
PP P
Sbjct: 171 PPPPAP 176
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 24.6 bits (51), Expect(2) = 6.6
Identities = 25/83 (30%), Positives = 27/83 (32%), Gaps = 10/83 (12%)
Frame = +3
Query: 369 PLXXGGX-PXXGGLXXXPPXFXXXFXGX---KKXAPXKGGXKKXPXFFXXKKXGGXA--- 527
PL GG P GG PP G + AP GG P GG A
Sbjct: 100 PLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALAR 159
Query: 528 ---SXFXXXXXKXKXGGGGGGXP 587
+ GGGGGG P
Sbjct: 160 PPGGGRGGALGRPPGGGGGGGGP 182
Score = 22.6 bits (46), Expect(2) = 6.6
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 564 GGGGGGXPXXFFFXXKXXXXXGGGG 638
GGGGGG P GGGG
Sbjct: 188 GGGGGGGPGRAPGGGGGGGGLGGGG 212
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 28.7 bits (61), Expect = 7.5
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 636 PPPPPXXXFFXXKKXXXXXPPPPP 565
PPPPP F PPPPP
Sbjct: 332 PPPPPPPSRFNNTTPKPPPPPPPP 355
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 28.7 bits (61), Expect = 7.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 637 PPPPXXFXFFXXKKKXXGXPPPPPP 563
PPPP + + PPPPPP
Sbjct: 530 PPPPYGYASYYPSVTPVQPPPPPPP 554
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 636 PPPPPXXXFFXXKKXXXXXPPPPP 565
PPPPP F PPPPP
Sbjct: 30 PPPPPYAASFSGLYSSYLHPPPPP 53
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -3
Query: 635 PPPXPXXXFXXKKKXXXXXPPPPP 564
PPP P K K PPPPP
Sbjct: 1932 PPPPPPPPVEGKPKPPPHAPPPPP 1955
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,979,572
Number of Sequences: 37544
Number of extensions: 509356
Number of successful extensions: 3757
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3101
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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