Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H13
         (999 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.012
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.34 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   9.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.5 bits (78), Expect = 0.012
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -2

Query: 707 GXXPXPPPPPXXXGEGXXPXXPPPXXXXXG 618
           G  P PPPPP   G G  P  PPP     G
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 32.3 bits (70), Expect = 0.11
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -3

Query: 706 GXPPPPPPPXXGXGREXXPXXPPXXGXXGG 617
           G PPPPPPP         P  PP     GG
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 30.3 bits (65), Expect = 0.44
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 714 GXGXXPXPPPPPXXDXGGXXXPXPPP 637
           G G  P PPPPP    GG     P P
Sbjct: 772 GAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 29.5 bits (63), Expect = 0.78
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -1

Query: 699 PXPPPPPXXDXGGXXXPXPPPXXXXXG 619
           P P PPP    GG   P PPP     G
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 19/67 (28%), Positives = 19/67 (28%)
 Frame = +2

Query: 515 PPPPXXGGGGXXFFXXXFPXPPPXXPKKXXXPXXXPXXXXXGGGXGXXLPPXSXXGGGGG 694
           PPPP              P PPP  P     P   P     G G     PP      GG 
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPA-PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790

Query: 695 XGXXPXP 715
               P P
Sbjct: 791 RYYAPAP 797


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 708 GXXPXPPPPPXXDXGGXXXPXPPP 637
           G  P PPPPP  +      P PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 697 PPPPPPXXGXGREXXPXXPPXXG 629
           PPPPPP  G      P  PP  G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 875 PPPPPPXXKXXKXXXPPP 928
           PPPPPP  +      PPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 706 GXPPPPPPP 680
           G PPPPPPP
Sbjct: 304 GLPPPPPPP 312


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 637 GGGXXGXXPSPIXXGGGGGXG 699
           GGG  G  P P   GG GG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFG 214


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 875 PPPPPPXXKXXKXXXPPP 928
           PPPPPP         PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,165
Number of Sequences: 5004
Number of extensions: 27539
Number of successful extensions: 394
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)