Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H09
         (1029 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.012
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.35 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.5 bits (78), Expect = 0.012
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = +2

Query: 479 PPXPXXXPXPPPPXXXXXXXXXXXGPPPKKXXPPXXX*GXPPPPPXXPXGXXXG 640
           PP     P P P            G PP    PP      PPPPP  P     G
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 35.1 bits (77), Expect = 0.016
 Identities = 23/66 (34%), Positives = 23/66 (34%)
 Frame = +2

Query: 500 PXPPPPXXXXXXXXXXXGPPPKKXXPPXXX*GXPPPPPXXPXGXXXGXFPPXXXXGGGXG 679
           P PPPP            P P    PP    G PPPPP           PP    G G  
Sbjct: 732 PPPPPPAVIVPTP----APAPIPVPPPAPIMGGPPPPP-----------PPPGVAGAGPP 776

Query: 680 GXPPPP 697
             PPPP
Sbjct: 777 PPPPPP 782



 Score = 31.9 bits (69), Expect = 0.15
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -1

Query: 708 PPXXGGGGXPPXPPPXXXXGGXXPXXXPXGXXGGGGGXPY 589
           PP    GG PP PPP    G   P   P       GG  Y
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792



 Score = 31.5 bits (68), Expect = 0.20
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = -1

Query: 720 PXGXPPXXGGGGXPPXPPPXXXXGGXXPXXXPXGXXGGGGGXPY 589
           P   P    GG  PP PPP     G  P   P      GG   Y
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793



 Score = 29.5 bits (63), Expect = 0.80
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -1

Query: 762 PLGXXPPRXXXXXSPXGXPPXXGGGGXPPXPPP 664
           P+   PP       P   PP    G  PP PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -1

Query: 723 SPXGXPPXXGGGGXPPXPPPXXXXGGXXPXXXP 625
           +P   PP     G PP PPP     G  P   P
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.35
 Identities = 22/73 (30%), Positives = 22/73 (30%)
 Frame = -1

Query: 696 GGGGXPPXPPPXXXXGGXXPXXXPXGXXGGGGGXPYXXLXXXXXXXXXXXXXXKXXLXXK 517
           G GG PP P      GG        G  GG GG P                     L   
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP-GGFEGGPGGFGGGPGGFGGGLGGF 254

Query: 516 GGGGXGXXXGXGG 478
           GGG  G   G GG
Sbjct: 255 GGGPGGFGGGPGG 267


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/53 (28%), Positives = 16/53 (30%)
 Frame = +2

Query: 599 PPPPPXXPXGXXXGXFPPXXXXGGGXGGXPPPPXXGGXPXGEXXXXXRGGXXP 757
           PPPPP  P        PP           PPPP       G      +G   P
Sbjct: 311 PPPPP--PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361



 Score = 25.8 bits (54), Expect = 9.9
 Identities = 21/81 (25%), Positives = 21/81 (25%), Gaps = 8/81 (9%)
 Frame = +2

Query: 479 PPXPXXXPXPPPPXXXXXXXXXXXGPPPKKXX--------PPXXX*GXPPPPPXXPXGXX 634
           PP P       PP            PPP            PP      PPPPP       
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP--RSAPS 371

Query: 635 XGXFPPXXXXGGGXGGXPPPP 697
            G  PP           P PP
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPP 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.149    0.519 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,567
Number of Sequences: 5004
Number of extensions: 35804
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)