Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H08
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1135 + 27896696-27897178                                         29   6.6  
02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814     28   8.7  
01_05_0648 + 23915469-23915898,23916551-23916619,23916956-239173...    28   8.7  

>06_03_1135 + 27896696-27897178
          Length = 160

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -2

Query: 176 TPPAGASGPTRPQPTXWGGQRCIAGXPXHKXRVRGPSAHKKSETEGAR 33
           +PPA    P+ P PT        AG P     VRGP    + +   AR
Sbjct: 78  SPPANTLPPSSPPPTAAAAAGDGAGVPHFLGAVRGPRYPLRKKLAAAR 125


>02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814
          Length = 472

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 200 PEAERRRWTPPAGASGPTRPQPTXWGGQR 114
           PE ER RW P + A   +RP     GG R
Sbjct: 20  PELERERWAPWSPAPTWSRPLSVGGGGSR 48


>01_05_0648 +
           23915469-23915898,23916551-23916619,23916956-23917315,
           23918435-23918973
          Length = 465

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +1

Query: 58  LWALGPRTRXLCXGSPAMXRCPPQXVGWGRVGPDAPAGGVQRRRSASGLAA 210
           L ++G   R +  GSP     P    G G     A  GG  RRR  +G AA
Sbjct: 283 LSSVGVPERPVMLGSPVDEELPAAGAGAGDTEAAACGGGGGRRRDQAGQAA 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,819,196
Number of Sequences: 37544
Number of extensions: 368117
Number of successful extensions: 907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)