Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H07
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    28   2.2  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   5.1  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    27   5.1  

>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -3

Query: 68  LERTRNNNQILRIPYSXS 15
           LE+T NNNQ LRI YS S
Sbjct: 93  LEKTINNNQELRIKYSTS 110


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 180 NVEYIKKTTGRVKVQDQGHG*S*RVFEAHYKDPILRAAAFTSVPQP 317
           N+   K T G V VQ +       +F  HYKD ILR  A   + +P
Sbjct: 670 NLAKKKSTAGFVLVQLRKLADHPMLFRIHYKDDILRQMAKAIMNEP 715


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 112 ICNVNVPREKHLTIRIKINRAIIMSNISKRRREGSR 219
           ICNV +P    ++I ++ N A  + N+S    + SR
Sbjct: 418 ICNVLIPLTDSMSIEVQGNSAAALGNLSSNVDDYSR 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,733
Number of Sequences: 5004
Number of extensions: 51626
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)