Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H07
         (952 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913...    33   0.33 
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937     29   7.2  
10_08_0080 - 14707309-14707420,14707799-14707846,14708418-147085...    29   7.2  
05_01_0187 + 1349725-1352238                                           29   7.2  

>07_03_0100 +
           13389899-13390219,13390723-13390841,13391220-13391315,
           13391481-13391553,13392055-13392123
          Length = 225

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -1

Query: 493 HN*GCAC*VSRGKGAPALAHMGTHRLPGPYSPTNPRAVGAVNDRVVKKTRSHM 335
           H   C C   R  G+P+L    +   PGP+S T       +N RV ++ R +M
Sbjct: 60  HRIVCPC--RRRGGSPSLTRRSSPEKPGPFSQTRSPETEKMNKRVERRKRKYM 110


>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
          Length = 853

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 572 DDEVICSEWAASGGMELXQLKKLEIES 652
           DD V C   A S GM+  +LK LE+ S
Sbjct: 604 DDNVSCHTMAPSEGMDFCELKVLEVTS 630


>10_08_0080 -
           14707309-14707420,14707799-14707846,14708418-14708543,
           14708586-14708743
          Length = 147

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 466 SRGKGAPALAHMGTHRLPGPYSPTNPRAVGAVNDRVVKK 350
           SR  G+P+L    +   PGP+S T       +N RV ++
Sbjct: 53  SRRGGSPSLTRRSSPEKPGPFSQTRSPETEKMNKRVERR 91


>05_01_0187 + 1349725-1352238
          Length = 837

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 572 DDEVICSEWAASGGMELXQLKKLEIES 652
           DD V C   A S GM+  +LK LE+ S
Sbjct: 567 DDNVSCHTMAPSEGMDFCELKVLEVTS 593


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,285,967
Number of Sequences: 37544
Number of extensions: 384713
Number of successful extensions: 833
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)