Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_H06
(897 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4T049 Cluster: Xylose isomerase; n=4; Deuterostomia|Re... 56 1e-06
UniRef50_Q9K993 Cluster: Xylose isomerase; n=46; cellular organi... 53 9e-06
UniRef50_Q6LUY7 Cluster: Xylose isomerase; n=107; cellular organ... 50 1e-04
UniRef50_Q9FKK7 Cluster: Xylose isomerase; n=13; Magnoliophyta|R... 49 1e-04
UniRef50_A7CYZ3 Cluster: Xylose isomerase; n=1; Opitutaceae bact... 44 0.007
UniRef50_Q9X1Z5 Cluster: Xylose isomerase; n=17; Bacteria|Rep: X... 44 0.007
UniRef50_A6LA39 Cluster: Xylose isomerase; n=2; Parabacteroides|... 43 0.012
UniRef50_Q8G3Q1 Cluster: Xylose isomerase; n=29; Bacteria|Rep: X... 40 0.065
UniRef50_Q8ELU7 Cluster: Xylose isomerase; n=9; Firmicutes|Rep: ... 40 0.11
UniRef50_Q0IPV6 Cluster: Os12g0165300 protein; n=1; Oryza sativa... 36 1.9
UniRef50_Q3HKP9 Cluster: Capsule polysaccharide export protein; ... 34 4.3
UniRef50_Q5YFC8 Cluster: Putative uncharacterized protein; n=2; ... 34 5.7
UniRef50_UPI0000587BEB Cluster: PREDICTED: hypothetical protein;... 33 7.5
UniRef50_A7P576 Cluster: Chromosome chr4 scaffold_6, whole genom... 33 9.9
>UniRef50_Q4T049 Cluster: Xylose isomerase; n=4; Deuterostomia|Rep:
Xylose isomerase - Tetraodon nigroviridis (Green puffer)
Length = 414
Score = 56.0 bits (129), Expect = 1e-06
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 163 PGGINLKLSPRRDG-DLRDYVTTYVKYVDAMARALRFACSLISEQILSKHLQQRYASYYS 339
PGG+N RR+ D+ D ++ +DA AR LR A ++ + I++ +++RY+S+
Sbjct: 311 PGGLNFDAKVRRESTDMEDLFIAHIAAMDAFARGLRNAARIVEDGIMAAMVKERYSSFSR 370
Query: 340 GFGSRLVSSDVSMEECEEYLKKS 408
G ++ ++EE E ++K++
Sbjct: 371 DIGQKVDEGSATLEEMEAFIKEN 393
>UniRef50_Q9K993 Cluster: Xylose isomerase; n=46; cellular
organisms|Rep: Xylose isomerase - Bacillus halodurans
Length = 440
Score = 53.2 bits (122), Expect = 9e-06
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Frame = +1
Query: 139 DDSLGTPLPGGINLKLSPRRDG-DLRDYVTTYVKYVDAMARALRFACSLISEQILSKHLQ 315
+D LG GG+N RR + D ++ +D+ A L+ A L+ +++L +
Sbjct: 326 NDGLGK---GGLNFDAKVRRGSFEANDLFHAHIAGMDSFAIGLKVANQLLEDRVLEDVID 382
Query: 316 QRYASYYSGFGSRLVSSDVSMEECEEYLKKSQGSRGDAPPSQGRALGVDATAVPGYLRPN 495
RY SY SG G ++ ++D +++E E Y S G+ S G+ + AT LR N
Sbjct: 383 NRYKSYQSGIGQKIANNDTNLKELEAYAL----SLGEIKHSSGQQERIKATLNQYLLRVN 438
>UniRef50_Q6LUY7 Cluster: Xylose isomerase; n=107; cellular
organisms|Rep: Xylose isomerase - Photobacterium
profundum (Photobacterium sp. (strain SS9))
Length = 439
Score = 49.6 bits (113), Expect = 1e-04
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 166 GGINLKLSPRRDG-DLRDYVTTYVKYVDAMARALRFACSLISEQILSKHLQQRYASYYSG 342
GG N RR D D ++ +D MA AL A ++I +LSK++ QRYA +
Sbjct: 334 GGFNFDSHVRRPSIDAEDLFYGHIGGMDTMALALERAANMIENDVLSKNIAQRYAGWNED 393
Query: 343 FGSRLVSSDVSMEECEEY 396
G +++S D S+E ++
Sbjct: 394 LGKKILSGDHSLETLAKF 411
>UniRef50_Q9FKK7 Cluster: Xylose isomerase; n=13; Magnoliophyta|Rep:
Xylose isomerase - Arabidopsis thaliana (Mouse-ear
cress)
Length = 477
Score = 49.2 bits (112), Expect = 1e-04
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 163 PGGINLKLSPRRDG-DLRDYVTTYVKYVDAMARALRFACSLISEQILSKHLQQRYASYYS 339
PGG N RR+ D+ D ++ +D MAR LR A ++ E LS+ +++RYA++ S
Sbjct: 374 PGGFNFDAKLRRESTDVEDLFIAHISGMDTMARGLRNAVKILEEGSLSELVRKRYATWDS 433
Query: 340 GFGSRLVSSDVSMEECEEYLKK 405
G ++ E E+ K+
Sbjct: 434 ELGKQIEEGKADFEYLEKKAKE 455
>UniRef50_A7CYZ3 Cluster: Xylose isomerase; n=1; Opitutaceae
bacterium TAV2|Rep: Xylose isomerase - Opitutaceae
bacterium TAV2
Length = 464
Score = 43.6 bits (98), Expect = 0.007
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +1
Query: 166 GGINLKLSPRRDG-DLRDYVTTYVKYVDAMARALRFACSLISEQILSKHLQQRYASYYSG 342
GGIN RR+ D+ D ++ +DA ARA A L+ E L +QRYA++ SG
Sbjct: 362 GGINFDAKIRRNSTDIEDLFIAHIAGMDAFARAAIAAEKLLKESPLPAMKKQRYATFDSG 421
Query: 343 FGSRLVSSDVSMEECEEYLKKSQGSRGDAPPSQGR 447
G +S+ + L + +G+ P G+
Sbjct: 422 AGLAFTQGKLSLAD----LHQIAHEQGEVTPRSGK 452
>UniRef50_Q9X1Z5 Cluster: Xylose isomerase; n=17; Bacteria|Rep:
Xylose isomerase - Thermotoga maritima
Length = 444
Score = 43.6 bits (98), Expect = 0.007
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 166 GGINLKLSPRRDG-DLRDYVTTYVKYVDAMARALRFACSLISEQILSKHLQQRYASYYSG 342
GG+N RR + D ++ +D A + A L + + K ++++Y S+ G
Sbjct: 334 GGLNFDAKVRRASYKVEDLFIGHIAGMDTFALGFKIAYKLAKDGVFDKFIEEKYRSFKEG 393
Query: 343 FGSRLVSSDVSMEECEEYL 399
G +V E+ EEY+
Sbjct: 394 IGKEIVEGKTDFEKLEEYI 412
>UniRef50_A6LA39 Cluster: Xylose isomerase; n=2;
Parabacteroides|Rep: Xylose isomerase - Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC11152)
Length = 442
Score = 42.7 bits (96), Expect = 0.012
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 166 GGINLKLSPRRDG-DLRDYVTTYVKYVDAMARALRFACSLISEQILSKHLQQRYASYYSG 342
GG N RR+ DL D ++ +DA ARAL A ++ K +RYAS+ +G
Sbjct: 340 GGTNFDAKTRRNSTDLEDIFIAHIGGMDAFARALMIAADILENSDYRKMRAERYASFDAG 399
Query: 343 FGSRLVSSDVSMEE 384
G +++E+
Sbjct: 400 EGKAFEDGKLTLED 413
>UniRef50_Q8G3Q1 Cluster: Xylose isomerase; n=29; Bacteria|Rep:
Xylose isomerase - Bifidobacterium longum
Length = 449
Score = 40.3 bits (90), Expect = 0.065
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 166 GGINLKLSPRRDGDLR-DYVTTYVKYVDAMARALRFACSLISEQILSKHLQQRYASYYSG 342
GG+N PRR D +++ +DA A L A + + + +RY+SY SG
Sbjct: 335 GGLNFDAKPRRTSFYEEDLFRSHIAGMDAYAAGLLVADKMNQDGFIQNLQAERYSSYDSG 394
Query: 343 FGSRLVSSDVSMEECEEY-LKKSQ 411
G + +V++ + E Y L K Q
Sbjct: 395 IGKDIDEGNVTLADLEAYSLDKPQ 418
>UniRef50_Q8ELU7 Cluster: Xylose isomerase; n=9; Firmicutes|Rep:
Xylose isomerase - Oceanobacillus iheyensis
Length = 439
Score = 39.5 bits (88), Expect = 0.11
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 139 DDSLGTPLPGGINLKLSPRRDG-DLRDYVTTYVKYVDAMARALRFACSLISEQILSKHLQ 315
+D LG GG+N RR D ++ +D+ A L+ A L+ +++L ++
Sbjct: 326 NDGLGK---GGLNFDAKVRRGSFTAEDLFHAHIAGMDSFAIGLKVAQRLMDDRVLENVVE 382
Query: 316 QRYASYYSGFGSRLVSSDVSMEECEEY 396
RY S+ G G +VS + E++
Sbjct: 383 DRYRSFNQGIGRDIVSGKTDFHQLEKH 409
>UniRef50_Q0IPV6 Cluster: Os12g0165300 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os12g0165300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 284
Score = 35.5 bits (78), Expect = 1.9
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = -3
Query: 430 VRPPGTPGSSSDILHTPPWRRRCSRVGNRTRCSTTRTVAANVSTVFVQKSNCKRIVEPSP 251
+RP TPG +S+ L P RC+ R R TT AN S+ F+ + + PSP
Sbjct: 151 IRPTSTPGGTSNTLQNPSTTCRCA---TRRRLPTTAASTANASS-FLAPTTTPTSLPPSP 206
>UniRef50_Q3HKP9 Cluster: Capsule polysaccharide export protein;
n=4; Rhodobacteraceae|Rep: Capsule polysaccharide export
protein - Rhodobacter sphaeroides (strain ATCC 17023 /
2.4.1 / NCIB 8253 / DSM158)
Length = 611
Score = 34.3 bits (75), Expect = 4.3
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -2
Query: 569 TKDLPKHSQIVYNNKKLVQFPVFIRFGRKYPGTAVASTPSARPWEGGASPR 417
++ +P ++V ++ P + F R PGTA + TPS RP GA PR
Sbjct: 46 SRSVPLTFRLVATLSTVLPIPA-LTFARPIPGTARSPTPSGRPVPPGAPPR 95
>UniRef50_Q5YFC8 Cluster: Putative uncharacterized protein; n=2;
Singapore grouper iridovirus|Rep: Putative
uncharacterized protein - Singapore grouper iridovirus
Length = 461
Score = 33.9 bits (74), Expect = 5.7
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 467 VASTPSARPWEGGASPRDP 411
+A+ PS RPWEG A+PR P
Sbjct: 373 IAAVPSKRPWEGSANPRRP 391
>UniRef50_UPI0000587BEB Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 319
Score = 33.5 bits (73), Expect = 7.5
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 527 KKLVQFPVFIRFGRKYPGTAV-ASTPSARPWEGGASPRDPWLFFRYSSHSSMETSLLTSR 351
+K V P + P +A ASTP++ P G RDP RY +H+SM L++ R
Sbjct: 46 EKPVYLPASYLLAKDTPSSAAPASTPTSAP-SGNGERRDP-PSSRYGNHNSMMEELISKR 103
Query: 350 EP 345
P
Sbjct: 104 FP 105
>UniRef50_A7P576 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 675
Score = 33.1 bits (72), Expect = 9.9
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 358 VSSDVSMEE-CEEYLKKSQGSRGDAPPSQGRALGVDATAVPGYLRPNLMK 504
+ DVS+ E C + G PPSQ R L A ++ GY+RP L+K
Sbjct: 474 LGKDVSLPETCVRIPQNPLRQLGGKPPSQRRILAFFAGSMHGYVRPILLK 523
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,068,863
Number of Sequences: 1657284
Number of extensions: 13933278
Number of successful extensions: 41643
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 39710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41628
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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