Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H06
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   2.1  
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.6  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    26   6.3  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    26   8.4  

>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = -2

Query: 443 PWEGGASPRDPWLFFRYSSHSSMETSLLTSREPNPL*YDAYRCCKCFDSICSE-IKLQAN 267
           PW+   S   PWL    S+     + LL+   P  L +  Y   K  +S+  +   L +N
Sbjct: 68  PWDKNISQHSPWLLEAASNSIGDSSPLLSPISPLKLRFHKYSVSKQLNSVGKQGFGLSSN 127

Query: 266 RRALAMAST 240
               A  S+
Sbjct: 128 HSRYASPSS 136


>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 37  LRFFVCLYYKRLRI*DDAEKYFSCFHFSCLNKCVD 141
           +R   C YYK   +    + +FSC    C ++ VD
Sbjct: 134 IRILDCKYYKEKAMQQVLQPFFSCSQILCFSREVD 168


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 433 AVRPPGTPGSSSDILHTPPWRRRCSRVGNRTRCSTTRTVAANVSTV 296
           +VRPPG+  S++   +    RR+ +R+  R    +  T +AN STV
Sbjct: 447 SVRPPGSGSSATKARNL---RRKKARILKRLMQESNDTFSANESTV 489


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 277 SLISEQILSKHLQQRYASYYSGFGSRLVSSD 369
           S++ +++LSKHL     +  +GF S + SS+
Sbjct: 285 SVVEDELLSKHLDDLLENQSTGFFSMIDSSN 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,619
Number of Sequences: 5004
Number of extensions: 53722
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)