Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H06
         (897 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding doma...    32   3.2  
AK093078-1|BAC04045.1|  710|Homo sapiens protein ( Homo sapiens ...    32   3.2  
AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens ...    32   3.2  
AB067474-1|BAB67780.1|  967|Homo sapiens KIAA1887 protein protein.     32   3.2  

>BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding domain
            protein 6 protein.
          Length = 1003

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 439  GRAVRPPGTPGSSSDILHTPPWRRRCSRVGNRTRCSTTRTVAANVSTVFVQKSNCKRIVE 260
            G   + P  PG  S+ L  PP   R SR G R + + TR   ++   + ++ S   R   
Sbjct: 923  GAEPKDPPPPGPHSEDLKVPPGVVRKSRRGRRRKYNPTRNSNSSRQDITLEPSPTARAAV 982

Query: 259  PSP 251
            P P
Sbjct: 983  PLP 985


>AK093078-1|BAC04045.1|  710|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35759 fis, clone TESTI2004737. ).
          Length = 710

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 439 GRAVRPPGTPGSSSDILHTPPWRRRCSRVGNRTRCSTTRTVAANVSTVFVQKSNCKRIVE 260
           G   + P  PG  S+ L  PP   R SR G R + + TR   ++   + ++ S   R   
Sbjct: 630 GAEPKDPPPPGPHSEDLKVPPGVVRKSRRGRRRKYNPTRNSNSSRQDITLEPSPTARAAV 689

Query: 259 PSP 251
           P P
Sbjct: 690 PLP 692


>AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens cDNA
            FLJ31837 fis, clone NT2RP7000069, weakly similar to MUCIN
            1 PRECURSOR. ).
          Length = 1003

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 439  GRAVRPPGTPGSSSDILHTPPWRRRCSRVGNRTRCSTTRTVAANVSTVFVQKSNCKRIVE 260
            G   + P  PG  S+ L  PP   R SR G R + + TR   ++   + ++ S   R   
Sbjct: 923  GAEPKDPPPPGPHSEDLKVPPGVVRKSRRGRRRKYNPTRNSNSSRQDITLEPSPTARAAV 982

Query: 259  PSP 251
            P P
Sbjct: 983  PLP 985


>AB067474-1|BAB67780.1|  967|Homo sapiens KIAA1887 protein protein.
          Length = 967

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 439  GRAVRPPGTPGSSSDILHTPPWRRRCSRVGNRTRCSTTRTVAANVSTVFVQKSNCKRIVE 260
            G   + P  PG  S+ L  PP   R SR G R + + TR   ++   + ++ S   R   
Sbjct: 887  GAEPKDPPPPGPHSEDLKVPPGVVRKSRRGRRRKYNPTRNSNSSRQDITLEPSPTARAAV 946

Query: 259  PSP 251
            P P
Sbjct: 947  PLP 949


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,985,383
Number of Sequences: 237096
Number of extensions: 2311133
Number of successful extensions: 5522
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5516
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)