Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H06
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha ...    30   2.6  
AL032637-22|CAM84821.1|  127|Caenorhabditis elegans Hypothetical...    29   4.5  
AC006617-9|AAF39767.1|  409|Caenorhabditis elegans Hypothetical ...    29   6.0  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha
           chain (clathrinassociated complex) protein 2 protein.
          Length = 925

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 217 YVTTYVKYVDAMARALRFACSLISEQILSKHLQ-QRYASYYSGFGSRLVSSDVSMEECEE 393
           Y T Y  YVD + + +R A   +SE++  + +Q         G+ ++ V   +    C E
Sbjct: 434 YATDYTWYVDVILKLIRIAGDYVSEEVWYRVIQIVVNREDVQGYAAKTVFEALQRPACHE 493

Query: 394 YLKKSQG 414
            + K  G
Sbjct: 494 NMVKVGG 500


>AL032637-22|CAM84821.1|  127|Caenorhabditis elegans Hypothetical
           protein Y43F8C.23 protein.
          Length = 127

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
 Frame = -2

Query: 596 TCSVTK**NTKDLPKHSQIVYNNKKLVQFPV---FIRFGRKYPGTAVASTPSARPWEGGA 426
           T  +TK  NT D  + +   Y+ + ++   V    I  G  Y G  V +  S R   GG 
Sbjct: 24  TSKITKKFNTTDETQDTS--YSGEPMICARVPGSSINVGYFYEGQQVKAACSNRCVSGGG 81

Query: 425 SPRDPWLFFRYSSH---SSMETSLLTSREPNPL*YDAYRCCK 309
            P   W F    +    +   T+ LTS EP P      R C+
Sbjct: 82  PPAGSWTFKPDPTEEPTTEESTTKLTSTEPAPTSQAVVRGCR 123


>AC006617-9|AAF39767.1|  409|Caenorhabditis elegans Hypothetical
           protein C39B5.2 protein.
          Length = 409

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 485 KYPGTAVASTPSARPWEGGASPRD 414
           +Y GT +     ARPW G   PR+
Sbjct: 329 RYAGTTILEELKARPWNGARRPRN 352


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 283 ISEQILSKHLQQRYASYYSGFGSRLVSSDVSMEECEEYLKKSQGSRGDAPPSQGR 447
           + E +  K   Q++    S   SRL S DV++E  EE ++ +      +PP   R
Sbjct: 422 LPENLSKKTSVQKHRRGSSRSASRLASLDVTLETVEEDVEPTPSPHPSSPPKISR 476


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,459,087
Number of Sequences: 27780
Number of extensions: 328474
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)