Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H04
         (880 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    24   1.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   4.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   4.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.7  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 488 EDTFQLNWPEQT*ECDQHP 432
           E T   +WPE    C +HP
Sbjct: 136 ERTHSCDWPENVDGCQKHP 154


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 548 VPEHDDNILAMKKSCPAYDKEHLKYTHSVEYLNKLHKYDE 667
           VP+   ++ A    C  Y K   +Y+ + + LNKL +  E
Sbjct: 528 VPQKTKHVRAFLGLCNFYRKFCARYSAATQDLNKLLRKGE 567


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 656 YGVYSGIPLNGCISDAPYHRLDRTF 582
           +G+  G PL+GC+ +     +DR +
Sbjct: 304 HGLLQGDPLSGCLCELYMAFMDRLY 328


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 713 SS*FWCQCSKISNALVHHI 657
           SS  WC  S  S+A  HH+
Sbjct: 143 SSSTWCNYSAYSSASRHHV 161


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 686 KISNALVHHIYGVYSGIP 633
           K+  A  HH+  VYS  P
Sbjct: 144 KVEGAATHHLGSVYSRHP 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,792
Number of Sequences: 336
Number of extensions: 5476
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)